Non-Coding RNA Search

Ss1.1-Pig4-TMW8038E22.3

Sequence:


               
               TTCCTTTTGGAGACTGCCCTATTTGGTCTTAAGGGTTCCACTGGGACCAGATTGGTTTTA
AGAAAGTCTGGAATGGCCCTAGGAATCTTGAATGCAATGAGTCCATTCTGCCCCCTGCTA
AACTTATTTAACACTCTCGCTCTTGTCTATTTGTTTTTCCCTTTTTTCTCTTAAAGTCTT
AAGACCAAGGTGACTCAAGGAAACACAAGACCACCCAGGGTCATTACAACCTAATTCTGC
TCCCTATTTTCTACCTTCTCCAACTTCCCCTGGTCTTCACATATGCCCTAAGAGCTAATC
TGGAAGTGACTTTCCTTTTGGAGAAAGGGAGGTGAACCTTAGGGTAAATAGCTATTTGCC
TCATTTAAATAGTATGCGAGCTCAGGCCATAGAGGCTGCTTCCTCAGAGACCATATATCT
CAGCACATATGTGGCTATATTCTTTTATGAAGATCCATAAATGCTGAAAATTCCACTAGT
TCTTCCTTTTGCCTACCCAGTTCTGATTTTTTATTATTATTAATTAATTGGATCCCTTTA
GCAGAAGATTCAGCAGATGAGATCTGTGTCTCATCTTATATCCAGAGCATATTCCATTAG
ACAAGTATCTGGACTCTAGCCTATTATATTCTTAAGCCAGAAGTCATAACCTGTTTCTCA
GCAAAGACTGGCTGCCTGTGGAGCTTACTATGTGCTGGTCCTGATTGCATACTCCGTCTG
CCTTGTGACTGCAAAGAGACCCACTCCAAATGAAAAAGGAGCCCCACTGGGCTTCGAGGT
TAGGTTGCCAGTGTTGCTCCCCATGGTGAGGTATTTGTCTCTTAAGTTTCAGTTGACCAC
TCTTCCTTCCTTTCTGGGACCCTGTGCCATGACCATTAAGGAAAAGGAGGACTAGGCCTC
CTGAGTATTCGGGTTCTGCCTTGGTGTTGGAATATGGTCAGTATTCTTTCTGCCTTGTAA
TCAGAACAAATGTATCTTCTTCCCTCAAGCCCTCACCTTAGATGCATCCTAGGAATCTCC
AAGCATGAGAAAGAAGACTAATTATCTCTTTATATGTGGCCCTGGCTTGTGGGGATACTT
ACCATTTTCTTTGCAATGAATTTGTGTTAGTTTTCACGGTCTTTTTTGCCTTCTGATGAA
ATGTTCAGTTTTCTTTTTCTCGTTTAAGGAAAAAAAAAAATGGTATCTGGTCAACCTTCC
CTCGGCCCTCCTACCTCCTCATCCTCCCCTCCCGAATGAGCACGGCTCCCTATGGCCACA
TACTCCTGCAAAGCTTTTCTGCTGCTTGGCTTTTCTCTGAACAGATCTGAAATTGCTGCT
CCTGTGGTTTTCTCAAAATTAACTTTGTCATGGTTTTAAAAGAGAAATCAAAATGCATTG
TCGCATTAAGCTTTTTAATAAAGGAAAAGTACCGAAAGAAAATAGGCAACACCAGCAAAT
TATATGTGGACAAGTTCTAAACTATATATACATACGTAATACATATATATATAAATAATC
ATCTAGTTCTCATTGTCATCTTACTGAAAGGAAATAAAACCTCCAAGGACCACCATTTCT
GAGAGGCTCTTGGAAATCTTTATGTCTAAGTGATTGTATTAGATCAGCAATAATGAATAT
GTAATCTCAAAAGATAAATAAAATATTCTTAAAATGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTTTGGAGACTGCCCTATTTGGTCTTAAGGGTTCCACTGGGACCAGATTGGTTTTA
AGAAAGTCTGGAATGGCCCTAGGAATCTTGAATGCAATGAGTCCATTCTGCCCCCTGCTA
AACTTATTTAACACTCTCGCTCTTGTCTATTTGTTTTTCCCTTTTTTCTCTTAAAGTCTT
AAGACCAAGGTGACTCAAGGAAACACAAGACCACCCAGGGTCATTACAACCTAATTCTGC
TCCCTATTTTCTACCTTCTCCAACTTCCCCTGGTCTTCACATATGCCCTAAGAGCTAATC
TGGAAGTGACTTTCCTTTTGGAGAAAGGGAGGTGAACCTTAGGGTAAATAGCTATTTGCC
TCATTTAAATAGTATGCGAGCTCAGGCCATAGAGGCTGCTTCCTCAGAGACCATATATCT
CAGCACATATGTGGCTATATTCTTTTATGAAGATCCATAAATGCTGAAAATTCCACTAGT
TCTTCCTTTTGCCTACCCAGTTCTGATTTTTTATTATTATTAATTAATTGGATCCCTTTA
GCAGAAGATTCAGCAGATGAGATCTGTGTCTCATCTTATATCCAGAGCATATTCCATTAG
ACAAGTATCTGGACTCTAGCCTATTATATTCTTAAGCCAGAAGTCATAACCTGTTTCTCA
GCAAAGACTGGCTGCCTGTGGAGCTTACTATGTGCTGGTCCTGATTGCATACTCCGTCTG
CCTTGTGACTGCAAAGAGACCCACTCCAAATGAAAAAGGAGCCCCACTGGGCTTCGAGGT
TAGGTTGCCAGTGTTGCTCCCCATGGTGAGGTATTTGTCTCTTAAGTTTCAGTTGACCAC
TCTTCCTTCCTTTCTGGGACCCTGTGCCATGACCATTAAGGAAAAGGAGGACTAGGCCTC
CTGAGTATTCGGGTTCTGCCTTGGTGTTGGAATATGGTCAGTATTCTTTCTGCCTTGTAA
TCAGAACAAATGTATCTTCTTCCCTCAAGCCCTCACCTTAGATGCATCCTAGGAATCTCC
AAGCATGAGAAAGAAGACTAATTATCTCTTTATATGTGGCCCTGGCTTGTGGGGATACTT
ACCATTTTCTTTGCAATGAATTTGTGTTAGTTTTCACGGTCTTTTTTGCCTTCTGATGAA
ATGTTCAGTTTTCTTTTTCTCGTTTAAGGAAAAAAAAAAATGGTATCTGGTCAACCTTCC
CTCGGCCCTCCTACCTCCTCATCCTCCCCTCCCGAATGAGCACGGCTCCCTATGGCCACA
TACTCCTGCAAAGCTTTTCTGCTGCTTGGCTTTTCTCTGAACAGATCTGAAATTGCTGCT
CCTGTGGTTTTCTCAAAATTAACTTTGTCATGGTTTTAAAAGAGAAATCAAAATGCATTG
TCGCATTAAGCTTTTTAATAAAGGAAAAGTACCGAAAGAAAATAGGCAACACCAGCAAAT
TATATGTGGACAAGTTCTAAACTATATATACATACGTAATACATATATATATAAATAATC
ATCTAGTTCTCATTGTCATCTTACTGAAAGGAAATAAAACCTCCAAGGACCACCATTTCT
GAGAGGCTCTTGGAAATCTTTATGTCTAAGTGATTGTATTAGATCAGCAATAATGAATAT
GTAATCTCAAAAGATAAATAAAATATTCTTAAAATGAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               226-336, - strand, RNAz p=0.876132
               

               
               480-584, - strand, RNAz p=0.999883

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-336, - strand, RNAz p=0.876132
               

               
               480-584, - strand, RNAz p=0.999883

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               253-366, + strand, RNAmicro p=0.94057

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               253-366, + strand, RNAmicro p=0.94057

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1026, gnl|bosTau2|chr4 (49599963-49598911)
               

               
               1-1026, gnl|Hg17|chr7 (128662191-128663178)
               

               
               1-1026, gnl|Mm7|chr6 (29842575-29843782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1026, gnl|bosTau2|chr4 (49599963-49598911)
               

               
               1-1026, gnl|Hg17|chr7 (128662191-128663178)
               

               
               1-1026, gnl|Mm7|chr6 (29842575-29843782)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               rec (1.03842)
               

               
               spl (0.429553)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (1.03842)
               

               
               spl (0.429553)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	226-336, - strand, RNAz p=0.876132
	480-584, - strand, RNAz p=0.999883

	1-1026, gnl\|bosTau2\|chr4 (49599963-49598911)
	1-1026, gnl\|Hg17\|chr7 (128662191-128663178)
	1-1026, gnl\|Mm7\|chr6 (29842575-29843782)

	rec (1.03842)
	spl (0.429553)
	sto (0.359648)
	cki (0.330469)
	lin (0.291206)
	ste (0.270416)
	tra (0.246184)
	cbe (0.239234)
	hea (0.204499)
	col (0.195008)
	fbs (0.175346)
	fco (0.157208)
	lun (0.150489)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	spc (0.113366)
	jej (0.0989218)