Non-Coding RNA Search

Ss1.1-Pig4-TMW8038F05.5

Sequence:


               
               GGGAAGAGGCCGGAGCCCCGTAGGGAAGAATGGAGTTGGCATCTCGCTCGCAGATCCCCA
AAGAAGTGGCTGACATCTTTAACGCCCCCAGTGATGATGAAGAGTTCATCGGTTTCCGAG
ATGATGTTCCCATGGAAACCCTCTCATCAGAGGAGAGCTGCGATAGTTTTGACTCACTGG
AGTCAGGGAAGCAGCAGGAGGTGCGTTTCCATTCCAAATACTTCACGGAAGAACTAAGAA
GAATTTTTATAGAGGACACTGACTCAGAGACGGAAGATTTTGAAGGATTTACGCAGAGTG
ACCTGAATGTTAATAGTTCCTCAGAAGTAATGCTCGTGGAGTCAGATCTGAGTGATGACG
GTGAAGCATCTTTTGTGAGTGAGGAAGAGGAAGATGATGAAGAAGCAAAGGCTACGTCTA
GAAGAAGCAGGCCTAGAAGAAGCAGCATTGGTCTTCGAGTAGCCTTGCAATTCCCCACCA
GGAAACTGGCCAAAAAAGCCGATAAGAACACCTCCTCTGAGCCGTTGTTTTCTGGCTCAC
GCTTACAGGACAATAAAAGAGCAATTCTTGGAAGGAAGACAAGCTGCAAACAGAGGAAGG
AAAGGGAAGATTCTGCCTCTGAGTCTGAGGATGACTCCAGGGATGAGGGCCAGGACTGCT
CGGATGCTCTGCTGAAAAGGACCATGAACATCAAGGAGAACAAAGCCATGCTTGCGCAGT
TATTGGCGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGAGGCCGGAGCCCCGTAGGGAAGAATGGAGTTGGCATCTCGCTCGCAGATCCCCA
AAGAAGTGGCTGACATCTTTAACGCCCCCAGTGATGATGAAGAGTTCATCGGTTTCCGAG
ATGATGTTCCCATGGAAACCCTCTCATCAGAGGAGAGCTGCGATAGTTTTGACTCACTGG
AGTCAGGGAAGCAGCAGGAGGTGCGTTTCCATTCCAAATACTTCACGGAAGAACTAAGAA
GAATTTTTATAGAGGACACTGACTCAGAGACGGAAGATTTTGAAGGATTTACGCAGAGTG
ACCTGAATGTTAATAGTTCCTCAGAAGTAATGCTCGTGGAGTCAGATCTGAGTGATGACG
GTGAAGCATCTTTTGTGAGTGAGGAAGAGGAAGATGATGAAGAAGCAAAGGCTACGTCTA
GAAGAAGCAGGCCTAGAAGAAGCAGCATTGGTCTTCGAGTAGCCTTGCAATTCCCCACCA
GGAAACTGGCCAAAAAAGCCGATAAGAACACCTCCTCTGAGCCGTTGTTTTCTGGCTCAC
GCTTACAGGACAATAAAAGAGCAATTCTTGGAAGGAAGACAAGCTGCAAACAGAGGAAGG
AAAGGGAAGATTCTGCCTCTGAGTCTGAGGATGACTCCAGGGATGAGGGCCAGGACTGCT
CGGATGCTCTGCTGAAAAGGACCATGAACATCAAGGAGAACAAAGCCATGCTTGCGCAGT
TATTGGCGGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10434646|dbj|BAB14330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10434646|dbj|BAB14330.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-487, + strand, RNAz p=0.981626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-487, + strand, RNAz p=0.981626

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               51-194, gnl|bosTau2|chr4 (11121181-11121324)
               

               
               51-194, gnl|Hg17|chr7 (21729755-21729612)
               

               
               51-194, gnl|Mm7|chr12 (115601491-115601628)
               


               
               332-710, gnl|bosTau2|chr4 (11128311-11128686)
               

               
               332-710, gnl|Hg17|chr7 (21721366-21720988)
               

               
               332-710, gnl|Mm7|chr12 (115608547-115608901)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-194, gnl|bosTau2|chr4 (11121181-11121324)
               

               
               51-194, gnl|Hg17|chr7 (21729755-21729612)
               

               
               51-194, gnl|Mm7|chr12 (115601491-115601628)
               


               
               332-710, gnl|bosTau2|chr4 (11128311-11128686)
               

               
               332-710, gnl|Hg17|chr7 (21721366-21720988)
               

               
               332-710, gnl|Mm7|chr12 (115608547-115608901)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               eep (0.122564)

	51-194, gnl\|bosTau2\|chr4 (11121181-11121324)
	51-194, gnl\|Hg17\|chr7 (21729755-21729612)
	51-194, gnl\|Mm7\|chr12 (115601491-115601628)

	332-710, gnl\|bosTau2\|chr4 (11128311-11128686)
	332-710, gnl\|Hg17\|chr7 (21721366-21720988)
	332-710, gnl\|Mm7\|chr12 (115608547-115608901)