Non-Coding RNA Search

Ss1.1-Pig4-TMW8038F08.5

Sequence:


               
               TGACTGTTTTAAGAAAGTCCTGCGTTATGAGGGCTTCTTTGGACTCTACCGGGGTCTGAT
ACCACAACTCATAGGGGTTGCTCCAGAAAAGGCCATTAAACTGACTGTTAATGATTTTGT
CCGGGACAAATTTACCAGAAGAGATGGCTCCATTCCACTTTTAGCAGAAGTCCTTGCTGG
AGGTTGTGCTGGTGGCTCTCAGGTCATCTTTACTAACCCTCTGGAGATAGTAAAGATTCG
CCTGCAGGTAGCTGGAGAGATCACCACAGGACCCAGGGTCAGTGCCCTGAATGTGCTCCG
GGATCTGGGACTTTTTGGTCTGTATAAGGGTGCCAAAGCGTGTTTCCTCCGAGACATTCC
CTTCTCTGCCATCTATTTTCCTGTTTATGCTCATTGCAAACTACTTCTGGCTGATGAAAA
TGGACACGTGGGAGGTTTAAATCTCCTTGCAGCTGGAGCCATGGCAGGTGTACCTGCTGC
CTCTCTGGTGACCCCTGCTGATGTCATCAAGACAAGACTGCAAGTGGCCGCCCGCGCTGG
CCAGACCACATACAGTGGTGTCATCGACTGTTTCAGGAAGATACTCCGGGAAGAAGGGCC
CTCAGCGTTTTGGAAGGGGACTGCAGCTCGAGTGTTTCGATCCTCTCCTCAGTTTGGTGT
TACTTTGGTAACCTATGAACTTCTCCAGCGGTGGTTTTACATTGATTTTGGAGGCCTCAA
ACCCTCCGGCTCCGAACCCACACCCAAGTCACGCATCGCAGACCTTCCTCCTGCCAATCC
CGATCACATTGGTGGATACAGACTCGCCACAGCCACTTTTGCTGGCATTGAAAACAAGTT
TGGCCTTTATCTCCCCAAGTTTAAATCTCCCACTGCTGCCGTGGTTCAGCCAAAGGTGGT
GGCGGCAGCTCAGTGATGAGAGACCCGCCCGAGTGTGGCAGAGTGGCGCCCTCAAGAGAG
AGGACTAGGAGAGCAGCCCCATAATGTATCCAGTCAGCTGCATGGTGCTGACGGAGCTGA
GGAATTAAACTATTCTTTCTATATGGCATATACATATATTTGTTTATAAACTAATCATTT
GCCCAGGAAAAAAAAAATACAATGCTGTTTGAAGCTTTAGTTTTATGTGTTGAGATGTTT
TCTAAGCCTTGGCATGAATTAGTGTTCTAGACTGCTTCGCACAGCTTGCACTTAGAGTGA
CTGTACATATTGTACATCTTTGTACAGAGACATCTTGGCACCTCATCCCAACAAATCACA
TTTATAGAATGTAACGCGGTTCTGAGTGGCTTGAAATGTACAGAATGTTTCAAAAGTGTT
TTATTAAGACTCACACGAAAACAAATGTATTAAAATTAAATTCATTCTCTTATTGCTGAC
TTATGGCAATAAAGCATCAATATTGGATGTAAAAAATTCCTAGCTTGTTTTCCATTCTGG
AATAAAAAGGTATTTGCTGATAAGAGGCATAACGAGACCAAGTGCTGATACCATTGAATA
AGAGATCCTTTGGAAAAGATGCATGCCAGTGGATGCCTGAGGGCCAGGTTCATGACGTGT
GTGCTGATGTGTTTCCATTTGTATTTCATATGTGTATAGCTTCTCCCCTGTCCATCAATC
AAAAGGCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTGTTTTAAGAAAGTCCTGCGTTATGAGGGCTTCTTTGGACTCTACCGGGGTCTGAT
ACCACAACTCATAGGGGTTGCTCCAGAAAAGGCCATTAAACTGACTGTTAATGATTTTGT
CCGGGACAAATTTACCAGAAGAGATGGCTCCATTCCACTTTTAGCAGAAGTCCTTGCTGG
AGGTTGTGCTGGTGGCTCTCAGGTCATCTTTACTAACCCTCTGGAGATAGTAAAGATTCG
CCTGCAGGTAGCTGGAGAGATCACCACAGGACCCAGGGTCAGTGCCCTGAATGTGCTCCG
GGATCTGGGACTTTTTGGTCTGTATAAGGGTGCCAAAGCGTGTTTCCTCCGAGACATTCC
CTTCTCTGCCATCTATTTTCCTGTTTATGCTCATTGCAAACTACTTCTGGCTGATGAAAA
TGGACACGTGGGAGGTTTAAATCTCCTTGCAGCTGGAGCCATGGCAGGTGTACCTGCTGC
CTCTCTGGTGACCCCTGCTGATGTCATCAAGACAAGACTGCAAGTGGCCGCCCGCGCTGG
CCAGACCACATACAGTGGTGTCATCGACTGTTTCAGGAAGATACTCCGGGAAGAAGGGCC
CTCAGCGTTTTGGAAGGGGACTGCAGCTCGAGTGTTTCGATCCTCTCCTCAGTTTGGTGT
TACTTTGGTAACCTATGAACTTCTCCAGCGGTGGTTTTACATTGATTTTGGAGGCCTCAA
ACCCTCCGGCTCCGAACCCACACCCAAGTCACGCATCGCAGACCTTCCTCCTGCCAATCC
CGATCACATTGGTGGATACAGACTCGCCACAGCCACTTTTGCTGGCATTGAAAACAAGTT
TGGCCTTTATCTCCCCAAGTTTAAATCTCCCACTGCTGCCGTGGTTCAGCCAAAGGTGGT
GGCGGCAGCTCAGTGATGAGAGACCCGCCCGAGTGTGGCAGAGTGGCGCCCTCAAGAGAG
AGGACTAGGAGAGCAGCCCCATAATGTATCCAGTCAGCTGCATGGTGCTGACGGAGCTGA
GGAATTAAACTATTCTTTCTATATGGCATATACATATATTTGTTTATAAACTAATCATTT
GCCCAGGAAAAAAAAAATACAATGCTGTTTGAAGCTTTAGTTTTATGTGTTGAGATGTTT
TCTAAGCCTTGGCATGAATTAGTGTTCTAGACTGCTTCGCACAGCTTGCACTTAGAGTGA
CTGTACATATTGTACATCTTTGTACAGAGACATCTTGGCACCTCATCCCAACAAATCACA
TTTATAGAATGTAACGCGGTTCTGAGTGGCTTGAAATGTACAGAATGTTTCAAAAGTGTT
TTATTAAGACTCACACGAAAACAAATGTATTAAAATTAAATTCATTCTCTTATTGCTGAC
TTATGGCAATAAAGCATCAATATTGGATGTAAAAAATTCCTAGCTTGTTTTCCATTCTGG
AATAAAAAGGTATTTGCTGATAAGAGGCATAACGAGACCAAGTGCTGATACCATTGAATA
AGAGATCCTTTGGAAAAGATGCATGCCAGTGGATGCCTGAGGGCCAGGTTCATGACGTGT
GTGCTGATGTGTTTCCATTTGTATTTCATATGTGTATAGCTTCTCCCCTGTCCATCAATC
AAAAGGCATTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61838069|ref|XP_587695.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61838069|ref|XP_587695.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               188-329, gnl|bosTau2|chr2 (17865330-17865471)
               

               
               188-329, gnl|Hg17|chr2 (172475784-172475643)
               

               
               188-329, gnl|Mm7|chr2 (71126320-71126179)
               


               
               462-626, gnl|bosTau2|chr2 (17869964-17870128)
               

               
               462-626, gnl|Hg17|chr2 (172469970-172469806)
               

               
               462-626, gnl|Mm7|chr2 (71120515-71120351)
               


               
               718-1631, gnl|bosTau2|chr2 (17871682-17872594)
               

               
               718-1631, gnl|Hg17|chr2 (172467492-172466576)
               

               
               718-1631, gnl|Mm7|chr2 (71119063-71118192)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-329, gnl|bosTau2|chr2 (17865330-17865471)
               

               
               188-329, gnl|Hg17|chr2 (172475784-172475643)
               

               
               188-329, gnl|Mm7|chr2 (71126320-71126179)
               


               
               462-626, gnl|bosTau2|chr2 (17869964-17870128)
               

               
               462-626, gnl|Hg17|chr2 (172469970-172469806)
               

               
               462-626, gnl|Mm7|chr2 (71120515-71120351)
               


               
               718-1631, gnl|bosTau2|chr2 (17871682-17872594)
               

               
               718-1631, gnl|Hg17|chr2 (172467492-172466576)
               

               
               718-1631, gnl|Mm7|chr2 (71119063-71118192)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               bfe (0.749288)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               lyg (0.532411)
               

               
               isp (0.451128)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               lyg (0.532411)
               

               
               isp (0.451128)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

	188-329, gnl\|bosTau2\|chr2 (17865330-17865471)
	188-329, gnl\|Hg17\|chr2 (172475784-172475643)
	188-329, gnl\|Mm7\|chr2 (71126320-71126179)

	462-626, gnl\|bosTau2\|chr2 (17869964-17870128)
	462-626, gnl\|Hg17\|chr2 (172469970-172469806)
	462-626, gnl\|Mm7\|chr2 (71120515-71120351)

	718-1631, gnl\|bosTau2\|chr2 (17871682-17872594)
	718-1631, gnl\|Hg17\|chr2 (172467492-172466576)
	718-1631, gnl\|Mm7\|chr2 (71119063-71118192)

	bfe (0.749288)
	vin (0.665115)
	tbr (0.616713)
	hea (0.613497)
	lyg (0.532411)
	isp (0.451128)
	fcc (0.39557)
	ldo (0.38801)
	spl (0.286369)
	che (0.272628)
	ssp (0.271039)
	ste (0.270416)
	ute (0.265569)
	sug (0.254582)
	pgl (0.236967)
	spc (0.226732)
	col (0.195008)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	cje (0.165235)
	ctl (0.153069)
	hlv (0.139256)
	ese (0.126502)
	eje (0.0988338)