Non-Coding RNA Search

Ss1.1-Pig4-TMW8038F21.3.5

Sequence:


               
               CTTGAAGGACCTCAAGATCAAATGACCCGTGAGGCGTCTGCGCCCTCAAGTTCAATGTAA
AGCACTCCTGGAGTCACAAAAACCTCTCCCAGATGCTGTACTTGAAGAGCTGCAAAAAAC
AGTCATGTCCAACTCAACTTCTGTTCCAGCTTGGCAGTGGCTGGCACACATCTATCAGTC
CCAAGGAATGATGGGTGCTGCAGAGATGTGTTATAGAAAGAGTCTACAAGTAGCATCCCA
ACAGGGCAGCTGGAGTGGGAAGCTCTCAAGTCTGTTGAGACTAGCACTGCTTGCATTAGA
AGTCTGCATGGCTAATATCTCCACTGATCACTGGCCATCCTTGGTTCAGGAAGCTACGGC
TGAGGCCTTGAAACTTTGCTTTTGTCCACTGGCTGTCCTTTTACAAGCTTTGTTACAATT
CAATCGCAAAATGGGGGCAAGAGAGACACGGCGACTTCTAGAGAGAGTGGTGTATCAGCC
TGGGTATCCCAAATCTATTGTATCAACTGCACGTTGGTACCTCCTGAGACACCTACATGC
CAAAAATGACTACGAGCTCATTGATGTGCTGGTAAACAATGCCCAAACTCATGGAGATAC
AAGAGCATTGGAACTGAATCAGAAACTATCCTCACAATGACAGTGCTTTATTTTATAGTA
AGCAAGCAAAGAAAAAGCTATTAGGAAAAAATGAAACAAAGAATCAAGACTGTTCCCCAA
AGCAGTATTTTAAAAAACTCCAGTTATAATCGTCCATTCCTTTTTTAAAATCTAAAAATG
TTTACAGTCTTAAGCTAGGGATGTAATCTTCCATAAACTCGTAATGTAACTTTAATTTGA
TAAAATCTTTGATTTTGAGAAAGTCCGTAATGAAAGGAAAAAAACCATGATTCCCTTGGC
TGTTCATTAGTTATTTGTAAATCATTATTATCTCTATATCTTGCATGGTGTACAATAGGA
CTTCTTTTTTTGGTAATTCCTTACAATAAAGCCTCAATAGCCATTTTCTAATTAATCTGC
AAAAGCAGATTAAAACAATGCAGAATTTTATTTGTTAAATAACAAATTCAAAGATTTAAT
TTCTTCTCTGAATTCTAGAGTTCAGCAGACTAACTCATCTAAAATCCAAATAGTCATATA
ACCTGTTTTACTAGTGGTTCATCTTGGATTCTGTTGAAGAAACGTAATGTAAATATTGGA
TGAGTCTTAAACTGCTAACGGATATGTTTATATTAATTCAAACACAGGTGTAAGGCTGAA
TTTTAAAAATTAATGGATACTTTAGGAAAATAATGCTAACACTATTTAACTGATCATGCA
ATTCCTTCAATTATGATGAAAATCTGAACTTTCTTAAAATAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAAGGACCTCAAGATCAAATGACCCGTGAGGCGTCTGCGCCCTCAAGTTCAATGTAA
AGCACTCCTGGAGTCACAAAAACCTCTCCCAGATGCTGTACTTGAAGAGCTGCAAAAAAC
AGTCATGTCCAACTCAACTTCTGTTCCAGCTTGGCAGTGGCTGGCACACATCTATCAGTC
CCAAGGAATGATGGGTGCTGCAGAGATGTGTTATAGAAAGAGTCTACAAGTAGCATCCCA
ACAGGGCAGCTGGAGTGGGAAGCTCTCAAGTCTGTTGAGACTAGCACTGCTTGCATTAGA
AGTCTGCATGGCTAATATCTCCACTGATCACTGGCCATCCTTGGTTCAGGAAGCTACGGC
TGAGGCCTTGAAACTTTGCTTTTGTCCACTGGCTGTCCTTTTACAAGCTTTGTTACAATT
CAATCGCAAAATGGGGGCAAGAGAGACACGGCGACTTCTAGAGAGAGTGGTGTATCAGCC
TGGGTATCCCAAATCTATTGTATCAACTGCACGTTGGTACCTCCTGAGACACCTACATGC
CAAAAATGACTACGAGCTCATTGATGTGCTGGTAAACAATGCCCAAACTCATGGAGATAC
AAGAGCATTGGAACTGAATCAGAAACTATCCTCACAATGACAGTGCTTTATTTTATAGTA
AGCAAGCAAAGAAAAAGCTATTAGGAAAAAATGAAACAAAGAATCAAGACTGTTCCCCAA
AGCAGTATTTTAAAAAACTCCAGTTATAATCGTCCATTCCTTTTTTAAAATCTAAAAATG
TTTACAGTCTTAAGCTAGGGATGTAATCTTCCATAAACTCGTAATGTAACTTTAATTTGA
TAAAATCTTTGATTTTGAGAAAGTCCGTAATGAAAGGAAAAAAACCATGATTCCCTTGGC
TGTTCATTAGTTATTTGTAAATCATTATTATCTCTATATCTTGCATGGTGTACAATAGGA
CTTCTTTTTTTGGTAATTCCTTACAATAAAGCCTCAATAGCCATTTTCTAATTAATCTGC
AAAAGCAGATTAAAACAATGCAGAATTTTATTTGTTAAATAACAAATTCAAAGATTTAAT
TTCTTCTCTGAATTCTAGAGTTCAGCAGACTAACTCATCTAAAATCCAAATAGTCATATA
ACCTGTTTTACTAGTGGTTCATCTTGGATTCTGTTGAAGAAACGTAATGTAAATATTGGA
TGAGTCTTAAACTGCTAACGGATATGTTTATATTAATTCAAACACAGGTGTAAGGCTGAA
TTTTAAAAATTAATGGATACTTTAGGAAAATAATGCTAACACTATTTAACTGATCATGCA
ATTCCTTCAATTATGATGAAAATCTGAACTTTCTTAAAATAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34782861|gb|AAH15163.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34782861|gb|AAH15163.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-298, + strand, RNAz p=0.880332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-298, + strand, RNAz p=0.880332

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               139-320, gnl|bosTau2|chr7 (59367082-59366902)
               

               
               139-320, gnl|Hg17|chr5 (94839921-94839741)
               

               
               139-320, gnl|Mm7|chr13 (73191632-73191807)
               


               
               566-1218, gnl|bosTau2|chr7 (59352451-59351811)
               

               
               566-1218, gnl|Hg17|chr5 (94826141-94825511)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-320, gnl|bosTau2|chr7 (59367082-59366902)
               

               
               139-320, gnl|Hg17|chr5 (94839921-94839741)
               

               
               139-320, gnl|Mm7|chr13 (73191632-73191807)
               


               
               566-1218, gnl|bosTau2|chr7 (59352451-59351811)
               

               
               566-1218, gnl|Hg17|chr5 (94826141-94825511)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbl (0.229595)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               med (0.116252)

	139-320, gnl\|bosTau2\|chr7 (59367082-59366902)
	139-320, gnl\|Hg17\|chr5 (94839921-94839741)
	139-320, gnl\|Mm7\|chr13 (73191632-73191807)

	566-1218, gnl\|bosTau2\|chr7 (59352451-59351811)
	566-1218, gnl\|Hg17\|chr5 (94826141-94825511)

	cbl (0.229595)
	fhi (0.169578)
	tbr (0.154178)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	med (0.116252)