Ss1.1-Pig4-TMW8038F22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTCGTGCTCAGGACACGCGCGAACGCGGCGATGGCGGATCCTGAGCTGCAGCTAGTGG CGCGGCGTATCCGCAGCTTCCCCGACTTCCCCGTCCCCGGCGTGCTGTTCAGGGATATCT CGCCTCTCCTGAAGGACCCCGACTCCTTCCGCGCCTCCATCAGCCTGTTGGCGAATCACC TGAAAAAGGCCCACGGGGGCAGGATTGACTACATCGCGGGCCTAGACTCCCGCGGCTTCC TGTTTGGTCCCTCCCTGGCCCAGGAGCTGGGCTTGGGCTGCATTCTCATCCGGAAGCGAG GGAAGCTGCCGGGCCCCACCGTGTCTGCCTCGTACGCGCTGGAATACGGGAAGGCTGAGC TGGAGATCCAGAGAGACGCCCTGGAACCAGGACAGAGGGTGGTGGTTGTGGACGACCTGC TCGCCACTGGCGGAACCATGCGTGCAGCCTGTGAGCTGCTGGGCCAGCTGCGGGCCGAAG TGCTAGAGTGCGTGAGCCTGGTGGAGCTGACCTCGCTGAAGGGCAGGGAGAAGCTGGGGG CCGTGCCCTTCTTCTCCCTTCTGCAGTTCGAGTGACCCTGCCTCTGCCCACCCCACCTGC CAGAGGGCCAGCCTGGTGGCTGCAGCGACGCCCTCCACAGGCCACCCGGGGGGCACTGGC CGCTCGCCTGGACTATTTTCTTTCGGCAGTTGAGGGACTTTCTCCAAGGCCAGCCTCTGC CCATGGCCTTCCTGCAGGCTCTGGAAGTGCCAAGGCCTGGAGTCGGGGCTGGAACTGGCC AACCCCCAGGCTGCTGCAGGCTAGTAGGTGGTGGAGTGGGGAAGAATAAACAACTTTCTA GAGCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTCGTGCTCAGGACACGCGCGAACGCGGCGATGGCGGATCCTGAGCTGCAGCTAGTGG CGCGGCGTATCCGCAGCTTCCCCGACTTCCCCGTCCCCGGCGTGCTGTTCAGGGATATCT CGCCTCTCCTGAAGGACCCCGACTCCTTCCGCGCCTCCATCAGCCTGTTGGCGAATCACC TGAAAAAGGCCCACGGGGGCAGGATTGACTACATCGCGGGCCTAGACTCCCGCGGCTTCC TGTTTGGTCCCTCCCTGGCCCAGGAGCTGGGCTTGGGCTGCATTCTCATCCGGAAGCGAG GGAAGCTGCCGGGCCCCACCGTGTCTGCCTCGTACGCGCTGGAATACGGGAAGGCTGAGC TGGAGATCCAGAGAGACGCCCTGGAACCAGGACAGAGGGTGGTGGTTGTGGACGACCTGC TCGCCACTGGCGGAACCATGCGTGCAGCCTGTGAGCTGCTGGGCCAGCTGCGGGCCGAAG TGCTAGAGTGCGTGAGCCTGGTGGAGCTGACCTCGCTGAAGGGCAGGGAGAAGCTGGGGG CCGTGCCCTTCTTCTCCCTTCTGCAGTTCGAGTGACCCTGCCTCTGCCCACCCCACCTGC CAGAGGGCCAGCCTGGTGGCTGCAGCGACGCCCTCCACAGGCCACCCGGGGGGCACTGGC CGCTCGCCTGGACTATTTTCTTTCGGCAGTTGAGGGACTTTCTCCAAGGCCAGCCTCTGC CCATGGCCTTCCTGCAGGCTCTGGAAGTGCCAAGGCCTGGAGTCGGGGCTGGAACTGGCC AACCCCCAGGCTGCTGCAGGCTAGTAGGTGGTGGAGTGGGGAAGAATAAACAACTTTCTA GAGCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 471-628, - strand, RNAz p=0.955818 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 471-628, - strand, RNAz p=0.955818 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 4-113, gnl|bosTau2|chr18 (12568521-12568630) | |
| 4-113, gnl|canFam2|chr5 (67560405-67560241) | |
| 4-113, gnl|echTel1|scaffold_233383 (205-42) | |
| 4-113, gnl|fr1|chrUn (278827644-278827494) | |
| 4-113, gnl|hg17|chr16 (87405725-87405871) | |
| 4-113, gnl|Hg17|chr16 (87405820-87405728) | |
| 4-113, gnl|loxAfr1|scaffold_192657 (249-71) | |
| 4-113, gnl|mm7|chr8 (121218754-121218925) | |
| 4-113, gnl|Mm7|chr8 (121218862-121218757) | |
| 4-113, gnl|monDom2|scaffold_23 (8117049-8116912) | |
| 4-113, gnl|oryCun1|scaffold_189535 (3126-3271) | |
| 4-113, gnl|panTro1|chr18 (82405242-82405388) | |
| 4-113, gnl|rheMac2|chr20 (86968041-86968187) | |
| 4-113, gnl|rn3|chr19 (52861423-52861592) | |
| 219-359, gnl|bosTau2|chr18 (12570179-12570318) | |
| 219-359, gnl|canFam2|chr5 (67561793-67561695) | |
| 219-359, gnl|danRer3|chr7 (49499899-49499801) | |
| 219-359, gnl|echTel1|scaffold_129930 (190-96) | |
| 219-359, gnl|fr1|chrUn (197168911-197168813) | |
| 219-359, gnl|hg17|chr16 (87404329-87404427) | |
| 219-359, gnl|Hg17|chr16 (87404466-87404327) | |
| 219-359, gnl|loxAfr1|scaffold_80445 (6563-6663) | |
| 219-359, gnl|mm7|chr8 (121217404-121217502) | |
| 219-359, gnl|Mm7|chr8 (121217541-121217402) | |
| 219-359, gnl|monDom2|scaffold_23 (8119411-8119313) | |
| 219-359, gnl|panTro1|chr18 (82403847-82403945) | |
| 219-359, gnl|rheMac2|chr20 (86966626-86966724) | |
| 219-359, gnl|rn3|chr19 (52860060-52860158) | |
| 219-359, gnl|tetNig1|chrUn_random (50040991-50040893) | |
| 219-359, gnl|xenTro1|scaffold_13 (2111388-2111485) | |
| 432-762, gnl|bosTau2|chr18 (12570748-12571064) | |
| 432-762, gnl|Hg17|chr16 (87403750-87403461) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-113, gnl|bosTau2|chr18 (12568521-12568630) | |
| 4-113, gnl|canFam2|chr5 (67560405-67560241) | |
| 4-113, gnl|echTel1|scaffold_233383 (205-42) | |
| 4-113, gnl|fr1|chrUn (278827644-278827494) | |
| 4-113, gnl|hg17|chr16 (87405725-87405871) | |
| 4-113, gnl|Hg17|chr16 (87405820-87405728) | |
| 4-113, gnl|loxAfr1|scaffold_192657 (249-71) | |
| 4-113, gnl|mm7|chr8 (121218754-121218925) | |
| 4-113, gnl|Mm7|chr8 (121218862-121218757) | |
| 4-113, gnl|monDom2|scaffold_23 (8117049-8116912) | |
| 4-113, gnl|oryCun1|scaffold_189535 (3126-3271) | |
| 4-113, gnl|panTro1|chr18 (82405242-82405388) | |
| 4-113, gnl|rheMac2|chr20 (86968041-86968187) | |
| 4-113, gnl|rn3|chr19 (52861423-52861592) | |
| 219-359, gnl|bosTau2|chr18 (12570179-12570318) | |
| 219-359, gnl|canFam2|chr5 (67561793-67561695) | |
| 219-359, gnl|danRer3|chr7 (49499899-49499801) | |
| 219-359, gnl|echTel1|scaffold_129930 (190-96) | |
| 219-359, gnl|fr1|chrUn (197168911-197168813) | |
| 219-359, gnl|hg17|chr16 (87404329-87404427) | |
| 219-359, gnl|Hg17|chr16 (87404466-87404327) | |
| 219-359, gnl|loxAfr1|scaffold_80445 (6563-6663) | |
| 219-359, gnl|mm7|chr8 (121217404-121217502) | |
| 219-359, gnl|Mm7|chr8 (121217541-121217402) | |
| 219-359, gnl|monDom2|scaffold_23 (8119411-8119313) | |
| 219-359, gnl|panTro1|chr18 (82403847-82403945) | |
| 219-359, gnl|rheMac2|chr20 (86966626-86966724) | |
| 219-359, gnl|rn3|chr19 (52860060-52860158) | |
| 219-359, gnl|tetNig1|chrUn_random (50040991-50040893) | |
| 219-359, gnl|xenTro1|scaffold_13 (2111388-2111485) | |
| 432-762, gnl|bosTau2|chr18 (12570748-12571064) | |
| 432-762, gnl|Hg17|chr16 (87403750-87403461) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fty (0.351679) | |
| nco (0.323468) | |
| eli (0.303628) | |
| pla (0.267344) | |
| ute (0.265569) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| nco (0.323468) | |
| eli (0.303628) | |
| pla (0.267344) | |
| ute (0.265569) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |