Non-Coding RNA Search

Ss1.1-Pig4-TMW8038G05.5

Sequence:


               
               GAGTAGTGAACTCTACCTTCATTTTTCAACTCTTTAACATAAAACTGTTCAATCCTAACG
CATTGTTACTTTAATATATGTATAAAGAAGTATTACTGTTTGTAAAGCTGCTGTTTGCTT
TAAAAAAAAAAAAACTGGCATTTAAGTATTTTCCATATGTTGTGCCAACAGGGTGGAACA
TTAATTTATCCATTTAAACACTTCATCTTTTTTTGATTTAAAATTTTTTGTGAAATAATT
TATTATCTTCCTCCTACTTTCAGCCTACACACATCATAGAATCAACCAAACTGTTTGCCT
GATCTGGAAATCTGAATCCTAATTAATGATAAAAATTTAAACTTTGTTGGCACATCACAC
CTTATAAGTATTTGTATTATTTTATAATTTAATTTCTAAATATACCACATGAATTTATAA
TTTAATGTCTTAATTGTAATGCTCTAATAAAAAAACTAGCAGAATTAGCGTGAATTATAA
CATGAAGGAATTTTCATCCTGTTAGTTCTTTTGCTGTATGAAGGATGATTGTTCTATCAC
ATTTTAGGGGTAATAACGGCTTTTTTGCACTGTGTAAATACTAGTGGAGATTCTTCTGTA
ACTAATAAAAGGATTATTGAAATGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAGTGAACTCTACCTTCATTTTTCAACTCTTTAACATAAAACTGTTCAATCCTAACG
CATTGTTACTTTAATATATGTATAAAGAAGTATTACTGTTTGTAAAGCTGCTGTTTGCTT
TAAAAAAAAAAAAACTGGCATTTAAGTATTTTCCATATGTTGTGCCAACAGGGTGGAACA
TTAATTTATCCATTTAAACACTTCATCTTTTTTTGATTTAAAATTTTTTGTGAAATAATT
TATTATCTTCCTCCTACTTTCAGCCTACACACATCATAGAATCAACCAAACTGTTTGCCT
GATCTGGAAATCTGAATCCTAATTAATGATAAAAATTTAAACTTTGTTGGCACATCACAC
CTTATAAGTATTTGTATTATTTTATAATTTAATTTCTAAATATACCACATGAATTTATAA
TTTAATGTCTTAATTGTAATGCTCTAATAAAAAAACTAGCAGAATTAGCGTGAATTATAA
CATGAAGGAATTTTCATCCTGTTAGTTCTTTTGCTGTATGAAGGATGATTGTTCTATCAC
ATTTTAGGGGTAATAACGGCTTTTTTGCACTGTGTAAATACTAGTGGAGATTCTTCTGTA
ACTAATAAAAGGATTATTGAAATGAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr10 (42354222-42353606)
               

               
               1-624, gnl|Hg17|chr15 (47068749-47068130)
               

               
               1-624, gnl|Mm7|chr2 (125478310-125477730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr10 (42354222-42353606)
               

               
               1-624, gnl|Hg17|chr15 (47068749-47068130)
               

               
               1-624, gnl|Mm7|chr2 (125478310-125477730)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fco (0.471624)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-624, gnl\|bosTau2\|chr10 (42354222-42353606)
	1-624, gnl\|Hg17\|chr15 (47068749-47068130)
	1-624, gnl\|Mm7\|chr2 (125478310-125477730)

	fco (0.471624)
	fhi (0.339155)
	fce (0.271592)
	cbe (0.239234)
	mgp (0.230681)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	bfe (0.149858)
	nmm (0.132802)
	jca (0.11396)
	jej (0.0989218)