Non-Coding RNA Search

Ss1.1-Pig4-TMW8038G06.5

Sequence:


               
               CTAATGAGGCAGATTCTGATCCAGGAAACCAAACAGAACCACAGAAGAGTCTGAAGCAAA
GCATTACAACACTGAATAAAAAGAGAGATGTCTCCTTTGTGGAAGTGACAGAGGAAAGAC
AGTGCCAGACTGAAAAAGTAAATAAAATGACACCCAAATCAAAGAAAAGGAAGACCTTCA
TAGATCCTTCTCCAGATAGTCATGAACTAATGGAGACAGTACCTGACACTGTTCAGGGAA
TATCAGTTGGATCTGAATACACTATTAAGAGAGAAAAATTGGAAAATGAGGAAATCGTCA
AACCAGACTTTTACACAAAAAAGTTGAAACCTTTATCTCAGATATATTCACCTAACAGAA
AGGATTCTTCCTTTAGCAGTGTTTTTGAGAGTTCAATACCTTTGAGTGCTTTGTCTAGTA
AAAATAGGAGAGAAAATTTTGTTCTGGAGCGTTCACCTGTCTTTCAAGTAAGTGATGATG
TGCATGAGATGATAAGCATGTGCATGGCCAAGAAGGCTGTACAAAAGAAATCAGAAATAG
GTATTAGAACGCTACAGGACTTGACAAATACCAGTTCTGTTTCAAATAACACTGCTAAAT
CTGAAAATAAGTTAGAAGAATTATCTTCAGAGCTGCCAAGCCGAAGAAGAAGGTGTACTC
CTCTCTCCTTAAAAGAGCCAAGTCTAAAAGGGAAGATGAGAAGATGAGGTGAATTTATGG
ATTCTGGTTTTTCTGAATTCTAAATTCACAGATGTCCATGTCCTTAGAACCAAGTTTAAA
ACATATTACTAATGAGGCAGATTCTGATCCAGGAAACCAAACAGAACCACAGAAGAGTCT
CAAGCTCTGAAAAAAAGAGAGAAAAATCAAAGAGACAATTTAAAAATAGTTCAGATGTGA
ACACTGAGGAAAAGATTGAAAATGGAACAATAAGAAGATCTATTGTCCTAGATGGTGAAG
GAGATTCAGAAGATCCAAATTTTATTTTCAATATAGAAAAGCTGACTCAATCGAACATAC
CAAAGAAAATAACCCTTCATAATGGCTTTGCTCAGGATGACAGACAAGGTACACAGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATGAGGCAGATTCTGATCCAGGAAACCAAACAGAACCACAGAAGAGTCTGAAGCAAA
GCATTACAACACTGAATAAAAAGAGAGATGTCTCCTTTGTGGAAGTGACAGAGGAAAGAC
AGTGCCAGACTGAAAAAGTAAATAAAATGACACCCAAATCAAAGAAAAGGAAGACCTTCA
TAGATCCTTCTCCAGATAGTCATGAACTAATGGAGACAGTACCTGACACTGTTCAGGGAA
TATCAGTTGGATCTGAATACACTATTAAGAGAGAAAAATTGGAAAATGAGGAAATCGTCA
AACCAGACTTTTACACAAAAAAGTTGAAACCTTTATCTCAGATATATTCACCTAACAGAA
AGGATTCTTCCTTTAGCAGTGTTTTTGAGAGTTCAATACCTTTGAGTGCTTTGTCTAGTA
AAAATAGGAGAGAAAATTTTGTTCTGGAGCGTTCACCTGTCTTTCAAGTAAGTGATGATG
TGCATGAGATGATAAGCATGTGCATGGCCAAGAAGGCTGTACAAAAGAAATCAGAAATAG
GTATTAGAACGCTACAGGACTTGACAAATACCAGTTCTGTTTCAAATAACACTGCTAAAT
CTGAAAATAAGTTAGAAGAATTATCTTCAGAGCTGCCAAGCCGAAGAAGAAGGTGTACTC
CTCTCTCCTTAAAAGAGCCAAGTCTAAAAGGGAAGATGAGAAGATGAGGTGAATTTATGG
ATTCTGGTTTTTCTGAATTCTAAATTCACAGATGTCCATGTCCTTAGAACCAAGTTTAAA
ACATATTACTAATGAGGCAGATTCTGATCCAGGAAACCAAACAGAACCACAGAAGAGTCT
CAAGCTCTGAAAAAAAGAGAGAAAAATCAAAGAGACAATTTAAAAATAGTTCAGATGTGA
ACACTGAGGAAAAGATTGAAAATGGAACAATAAGAAGATCTATTGTCCTAGATGGTGAAG
GAGATTCAGAAGATCCAAATTTTATTTTCAATATAGAAAAGCTGACTCAATCGAACATAC
CAAAGAAAATAACCCTTCATAATGGCTTTGCTCAGGATGACAGACAAGGTACACAGTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-199, - strand, RNAz p=0.588783

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.588783

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-543, gnl|bosTau2|chr2 (48046932-48046381)
               

               
               1-543, gnl|Hg17|chr2 (201263655-201264209)
               

               
               1-543, gnl|Mm7|chr1 (58268156-58268707)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chr2 (48046932-48046381)
               

               
               1-543, gnl|Hg17|chr2 (201263655-201264209)
               

               
               1-543, gnl|Mm7|chr1 (58268156-58268707)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	1-543, gnl\|bosTau2\|chr2 (48046932-48046381)
	1-543, gnl\|Hg17\|chr2 (201263655-201264209)
	1-543, gnl\|Mm7\|chr1 (58268156-58268707)