Ss1.1-Pig4-TMW8038G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGGCGCAGGAAGCAGGGTGCAGTGGCCAGTCGCGCTGTCGGCCGTGAGTCTGTCGG TCCCGAGGGCAGGATGGAGAAGCTGCGGCTCCTGGGCCTCCGCTACCAGGAGTACGTGAC TCGTCACCCGGCCGCCACGGCCCAGCTGGAGACAGCAGTGCGGGGCCTCAGTTACCTGCT GGCAGGTCGTTTCGCCGATTCGCACGAGCTGTCGGAGCTGGTGTACTCTGCCTCTAACCT GCTGGTGCTGCTCAATGACGGGATCCTACGAAAGGAACTTCGAAAAAAGTTGCCTGTGTC ACTGTCCCAGCAGAAGCTGCTGACATGGCTGAGTGTGCTGGAGTGCGTGGAGGTCTTCAT GGAGATGGGGGCCGCCAAAGTGTGGGGTGAAGTGGGACGTTGGCTCGTCATTGCCCTCAT CCAGCTGGCCAAGGCTGTACTGCGGATGTTCCTGCTGATCTGGTTCAAAGCTGGCCTCCA GACATCACCCCCCATCGTTCCACTGGACAGGGAGACCCAGGCACAGCCCCAGGATGGTGA CCACAGCTGTGGCAGCGGAGAGCAGTCATATGTGGGGAAGCGGTCAAACCGAGTGGTGCG AACCCTCCAGAACACTCCGTCCCTGCACTCAAGGCACTGGGGAGCCCCCCAGCAGCGGGA AGGACGGCAGCAGCAGCAGCAGCGTGAGGAGCTGAGCATCCCCCCAACCCCGCTGGGGCT GCAGGAGACCATCGCCGAGTCCCTGTATATTGCCCGGCCCCTGCTGCACTTGCTCAGCCT GGGCTTGTGGGGTCAGCGGTCGTGGACACCCTGGCTCCTGTCTGGTGTCGTGGATGTGAC CAGCCTGAGCCTCCTGAGTGACAGGAAGGGCCTGACCCGGAGGGAGCGGCTGGAACTGCG ACGCCGGACCATCCTGCTGCTCTACTACCTGCTGCGCTCCCCGTTCTATGACCGCTTCTC GGAGGCCAAGATCCTCTTTCTGCTTCAGCTCCTGGCAGACCACGTCCCAGGCATTGGCCT GGTCACAAGGCCGCTCATGGATTACTTGCCCACCTGGCAGAAAATTTATTTCTACAATTG GGGCTGACAGCCGTTGCACGAGCGGGGTGTGGGAGGGGCAGGGAAGCCTCAGTCCCTCAG TCCCCTGTGCCCTAATAAAACTGACTCTGGCCGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGGCGCAGGAAGCAGGGTGCAGTGGCCAGTCGCGCTGTCGGCCGTGAGTCTGTCGG TCCCGAGGGCAGGATGGAGAAGCTGCGGCTCCTGGGCCTCCGCTACCAGGAGTACGTGAC TCGTCACCCGGCCGCCACGGCCCAGCTGGAGACAGCAGTGCGGGGCCTCAGTTACCTGCT GGCAGGTCGTTTCGCCGATTCGCACGAGCTGTCGGAGCTGGTGTACTCTGCCTCTAACCT GCTGGTGCTGCTCAATGACGGGATCCTACGAAAGGAACTTCGAAAAAAGTTGCCTGTGTC ACTGTCCCAGCAGAAGCTGCTGACATGGCTGAGTGTGCTGGAGTGCGTGGAGGTCTTCAT GGAGATGGGGGCCGCCAAAGTGTGGGGTGAAGTGGGACGTTGGCTCGTCATTGCCCTCAT CCAGCTGGCCAAGGCTGTACTGCGGATGTTCCTGCTGATCTGGTTCAAAGCTGGCCTCCA GACATCACCCCCCATCGTTCCACTGGACAGGGAGACCCAGGCACAGCCCCAGGATGGTGA CCACAGCTGTGGCAGCGGAGAGCAGTCATATGTGGGGAAGCGGTCAAACCGAGTGGTGCG AACCCTCCAGAACACTCCGTCCCTGCACTCAAGGCACTGGGGAGCCCCCCAGCAGCGGGA AGGACGGCAGCAGCAGCAGCAGCGTGAGGAGCTGAGCATCCCCCCAACCCCGCTGGGGCT GCAGGAGACCATCGCCGAGTCCCTGTATATTGCCCGGCCCCTGCTGCACTTGCTCAGCCT GGGCTTGTGGGGTCAGCGGTCGTGGACACCCTGGCTCCTGTCTGGTGTCGTGGATGTGAC CAGCCTGAGCCTCCTGAGTGACAGGAAGGGCCTGACCCGGAGGGAGCGGCTGGAACTGCG ACGCCGGACCATCCTGCTGCTCTACTACCTGCTGCGCTCCCCGTTCTATGACCGCTTCTC GGAGGCCAAGATCCTCTTTCTGCTTCAGCTCCTGGCAGACCACGTCCCAGGCATTGGCCT GGTCACAAGGCCGCTCATGGATTACTTGCCCACCTGGCAGAAAATTTATTTCTACAATTG GGGCTGACAGCCGTTGCACGAGCGGGGTGTGGGAGGGGCAGGGAAGCCTCAGTCCCTCAG TCCCCTGTGCCCTAATAAAACTGACTCTGGCCGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1026-1127, + strand, RNAz p=0.93374 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1026-1127, + strand, RNAz p=0.93374 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004813, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-187, gnl|bosTau2|chr15 (47736134-47735947) | |
| 1-187, gnl|Hg17|chr11 (45896012-45895825) | |
| 1-187, gnl|Mm7|chr2 (92226206-92226393) | |
| 298-438, gnl|bosTau2|chr15 (47734531-47734391) | |
| 298-438, gnl|canFam2|chr18 (46542817-46542640) | |
| 298-438, gnl|dasNov1|scaffold_4877 (1118-1294) | |
| 298-438, gnl|fr1|chrUn (228190913-228190756) | |
| 298-438, gnl|galGal2|chr5 (21205445-21205267) | |
| 298-438, gnl|hg17|chr11 (45893803-45893980) | |
| 298-438, gnl|Hg17|chr11 (45893964-45893824) | |
| 298-438, gnl|mm7|chr2 (92228307-92228134) | |
| 298-438, gnl|Mm7|chr2 (92228145-92228285) | |
| 298-438, gnl|monDom2|scaffold_33 (11925898-11926069) | |
| 298-438, gnl|oryCun1|scaffold_204989 (46118-46296) | |
| 298-438, gnl|panTro1|chr9 (46400285-46400462) | |
| 298-438, gnl|rheMac2|chr14 (26218704-26218527) | |
| 298-438, gnl|rn3|chr3 (76671881-76671708) | |
| 298-438, gnl|tetNig1|chrUn_random (6572404-6572514) | |
| 840-964, gnl|bosTau2|chr15 (47732689-47732565) | |
| 840-964, gnl|canFam2|chr18 (46544524-46544387) | |
| 840-964, gnl|echTel1|scaffold_155102 (3484-3619) | |
| 840-964, gnl|fr1|chrUn (228192823-228192689) | |
| 840-964, gnl|galGal2|chr5 (21207562-21207427) | |
| 840-964, gnl|hg17|chr11 (45891942-45892077) | |
| 840-964, gnl|Hg17|chr11 (45892069-45891945) | |
| 840-964, gnl|loxAfr1|scaffold_39929 (14710-14575) | |
| 840-964, gnl|mm7|chr2 (92230057-92229922) | |
| 840-964, gnl|Mm7|chr2 (92229927-92230052) | |
| 840-964, gnl|monDom2|scaffold_33 (11921200-11921336) | |
| 840-964, gnl|panTro1|chr9 (46398425-46398560) | |
| 840-964, gnl|rheMac2|chr14 (26220607-26220472) | |
| 840-964, gnl|rn3|chr3 (76673634-76673499) | |
| 840-964, gnl|tetNig1|chrUn_random (6571437-6571571) | |
| 840-964, gnl|xenTro1|scaffold_76 (1601553-1601688) | |
| 1026-1176, gnl|bosTau2|chr15 (47730689-47730528) | |
| 1026-1176, gnl|Hg17|chr11 (45888442-45888302) | |
| 1026-1176, gnl|Mm7|chr2 (92231749-92231930) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-187, gnl|bosTau2|chr15 (47736134-47735947) | |
| 1-187, gnl|Hg17|chr11 (45896012-45895825) | |
| 1-187, gnl|Mm7|chr2 (92226206-92226393) | |
| 298-438, gnl|bosTau2|chr15 (47734531-47734391) | |
| 298-438, gnl|canFam2|chr18 (46542817-46542640) | |
| 298-438, gnl|dasNov1|scaffold_4877 (1118-1294) | |
| 298-438, gnl|fr1|chrUn (228190913-228190756) | |
| 298-438, gnl|galGal2|chr5 (21205445-21205267) | |
| 298-438, gnl|hg17|chr11 (45893803-45893980) | |
| 298-438, gnl|Hg17|chr11 (45893964-45893824) | |
| 298-438, gnl|mm7|chr2 (92228307-92228134) | |
| 298-438, gnl|Mm7|chr2 (92228145-92228285) | |
| 298-438, gnl|monDom2|scaffold_33 (11925898-11926069) | |
| 298-438, gnl|oryCun1|scaffold_204989 (46118-46296) | |
| 298-438, gnl|panTro1|chr9 (46400285-46400462) | |
| 298-438, gnl|rheMac2|chr14 (26218704-26218527) | |
| 298-438, gnl|rn3|chr3 (76671881-76671708) | |
| 298-438, gnl|tetNig1|chrUn_random (6572404-6572514) | |
| 840-964, gnl|bosTau2|chr15 (47732689-47732565) | |
| 840-964, gnl|canFam2|chr18 (46544524-46544387) | |
| 840-964, gnl|echTel1|scaffold_155102 (3484-3619) | |
| 840-964, gnl|fr1|chrUn (228192823-228192689) | |
| 840-964, gnl|galGal2|chr5 (21207562-21207427) | |
| 840-964, gnl|hg17|chr11 (45891942-45892077) | |
| 840-964, gnl|Hg17|chr11 (45892069-45891945) | |
| 840-964, gnl|loxAfr1|scaffold_39929 (14710-14575) | |
| 840-964, gnl|mm7|chr2 (92230057-92229922) | |
| 840-964, gnl|Mm7|chr2 (92229927-92230052) | |
| 840-964, gnl|monDom2|scaffold_33 (11921200-11921336) | |
| 840-964, gnl|panTro1|chr9 (46398425-46398560) | |
| 840-964, gnl|rheMac2|chr14 (26220607-26220472) | |
| 840-964, gnl|rn3|chr3 (76673634-76673499) | |
| 840-964, gnl|tetNig1|chrUn_random (6571437-6571571) | |
| 840-964, gnl|xenTro1|scaffold_76 (1601553-1601688) | |
| 1026-1176, gnl|bosTau2|chr15 (47730689-47730528) | |
| 1026-1176, gnl|Hg17|chr11 (45888442-45888302) | |
| 1026-1176, gnl|Mm7|chr2 (92231749-92231930) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fli (0.405762) | |
| hyp (0.285673) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| hyp (0.285673) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) |