Non-Coding RNA Search

Ss1.1-Pig4-TMW8038G10.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTAGCAGTAAAACAAATTGTTTATTACAGCATATAATGTG
TTATATTAAATTTACACAAAGATATATAAAAACACATACTGTTTATATCATACAGTCATT
TAACATCAACAGGAATATCAAAACAAATACTACTCATGCACCAAACATGCATATATTGGT
ATAAAAAAGCAACTTTACACAATACTGTTTACCAAAAAAAATTTTTTTTTAAAAAAAAGC
CCTTCCAGAGAGGGTCAGTGGTCCAATCTGGACTGGATTGCACTAATATGTTTGGGCTAA
TGCTTAGGTGGCACAGTGCTCAGTGAGCAATTCTGAGCTTGGGGGTCACACCCAAAGGTT
ATTTTGTTAGGACTGAGTGTCTCTGTATCCAATGACCAAAATGTTATCCCAAAGGCAAGT
CTCCAAGGAAGAAATGGTTGGATCTGCTGCAAATCAGGGAGGGGAAGAAAGGCATCCATG
TTGGGTAAATGGCCCTGGGGGGTTACTGTAACCAGGGCCTAGGCACCAAGTGCGGCAAAG
GTTTTAGTGAATCATTTTAAGGTATTACCAGCCTACCTATCCAGGTCACCTCTCTGGATT
TAGGGTCTGGTCTTCAAGTTCTGAGTCCAGTAAACCAAACAGTTCTGAGAAGAAAATAGA
ATGGGGATACATCTGAGAAAAGCAGAGTATATAAAAAGTTATAGAAAACCCATGACTGCC
CCCTGTACCTACCTCACAAAACTGTATGTGTTAGCCCCAACAAGATAAACCCTCATGGAG
ACGCCACCCCAAAGAACCAAAGGAGCAAGTGTATGTCGGAAAATTCCATTCACCTGACCT
TCAGACCAAACGGTCTCATCCCATTAACACTTGAACATTACAACCTGTGCCTTCAAAATG
CTTAGAAAATTTCAAATAAAAGCCATCGGTACCACAAAATTCACTATCACCACCATCAGA
AACTCGATATTCACTTCTAACCAGCAAAACATTCTTTACCTTCCATTAAAGGCACTAGTG
TCCATACACGATGAAGATGAGACATAATTCACCTCGGTTTTAACTTAACAAAAGAAAGCA
TTCTATGAAATTATTACACACAACAAGGAAGACGCCACAGCTTTCTTGGGAAGGAGAAAA
ACTCCCGCTTTCTACACCAACGGTGCTACTCAAACGGTCGTCATCAGTTTCAGAGAGCCA
GACCGAAAGCGAAGGATCTTCTTCTTGAGGTTGTGCGAAGCCTTGATCTTGACAAAGGTT
TTGGTGGGGTGACCGCGGAGGTCCGGGGCCGGGACCGGCTGCAGAGGGAGCGTCTGGACG
AACTGGGACCAAATCAGGCCCCCGCTCTCCTCCGAGTCGCTGGTGCTGCTGCTGTCGCCC
ACGAAGTCGCCCTCGCTCACGCTGGACTCGCTGTCGCCGAAGCAGTTGGTGGTGTAGTTG
CTGCGCTCGTCCTCGCTGGTGTCCAGCACGGTCGAGTGGAACAGGGACTCGCACTCGGCC
GAGTACTCCGAGTCGCTGGCCACGTAGGCATAGGGGCTGGCGAAGGGCGGCCCCGCCGCG
AACAGGGCGGCGGGCTCCCGCCGGCCCCGCCGCGCCCGCCGCAGCGCCTCCTCGTAGGAC
ACCTCGGCGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTAGCAGTAAAACAAATTGTTTATTACAGCATATAATGTG
TTATATTAAATTTACACAAAGATATATAAAAACACATACTGTTTATATCATACAGTCATT
TAACATCAACAGGAATATCAAAACAAATACTACTCATGCACCAAACATGCATATATTGGT
ATAAAAAAGCAACTTTACACAATACTGTTTACCAAAAAAAATTTTTTTTTAAAAAAAAGC
CCTTCCAGAGAGGGTCAGTGGTCCAATCTGGACTGGATTGCACTAATATGTTTGGGCTAA
TGCTTAGGTGGCACAGTGCTCAGTGAGCAATTCTGAGCTTGGGGGTCACACCCAAAGGTT
ATTTTGTTAGGACTGAGTGTCTCTGTATCCAATGACCAAAATGTTATCCCAAAGGCAAGT
CTCCAAGGAAGAAATGGTTGGATCTGCTGCAAATCAGGGAGGGGAAGAAAGGCATCCATG
TTGGGTAAATGGCCCTGGGGGGTTACTGTAACCAGGGCCTAGGCACCAAGTGCGGCAAAG
GTTTTAGTGAATCATTTTAAGGTATTACCAGCCTACCTATCCAGGTCACCTCTCTGGATT
TAGGGTCTGGTCTTCAAGTTCTGAGTCCAGTAAACCAAACAGTTCTGAGAAGAAAATAGA
ATGGGGATACATCTGAGAAAAGCAGAGTATATAAAAAGTTATAGAAAACCCATGACTGCC
CCCTGTACCTACCTCACAAAACTGTATGTGTTAGCCCCAACAAGATAAACCCTCATGGAG
ACGCCACCCCAAAGAACCAAAGGAGCAAGTGTATGTCGGAAAATTCCATTCACCTGACCT
TCAGACCAAACGGTCTCATCCCATTAACACTTGAACATTACAACCTGTGCCTTCAAAATG
CTTAGAAAATTTCAAATAAAAGCCATCGGTACCACAAAATTCACTATCACCACCATCAGA
AACTCGATATTCACTTCTAACCAGCAAAACATTCTTTACCTTCCATTAAAGGCACTAGTG
TCCATACACGATGAAGATGAGACATAATTCACCTCGGTTTTAACTTAACAAAAGAAAGCA
TTCTATGAAATTATTACACACAACAAGGAAGACGCCACAGCTTTCTTGGGAAGGAGAAAA
ACTCCCGCTTTCTACACCAACGGTGCTACTCAAACGGTCGTCATCAGTTTCAGAGAGCCA
GACCGAAAGCGAAGGATCTTCTTCTTGAGGTTGTGCGAAGCCTTGATCTTGACAAAGGTT
TTGGTGGGGTGACCGCGGAGGTCCGGGGCCGGGACCGGCTGCAGAGGGAGCGTCTGGACG
AACTGGGACCAAATCAGGCCCCCGCTCTCCTCCGAGTCGCTGGTGCTGCTGCTGTCGCCC
ACGAAGTCGCCCTCGCTCACGCTGGACTCGCTGTCGCCGAAGCAGTTGGTGGTGTAGTTG
CTGCGCTCGTCCTCGCTGGTGTCCAGCACGGTCGAGTGGAACAGGGACTCGCACTCGGCC
GAGTACTCCGAGTCGCTGGCCACGTAGGCATAGGGGCTGGCGAAGGGCGGCCCCGCCGCG
AACAGGGCGGCGGGCTCCCGCCGGCCCCGCCGCGCCCGCCGCAGCGCCTCCTCGTAGGAC
ACCTCGGCGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               614-731, - strand, RNAz p=0.81318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               614-731, - strand, RNAz p=0.81318

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016651, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016651, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-1692, gnl|bosTau2|chr10 (47704960-47706575)
               

               
               83-1692, gnl|Hg17|chr14 (58184745-58183137)
               

               
               83-1692, gnl|Mm7|chr12 (69263886-69262265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-1692, gnl|bosTau2|chr10 (47704960-47706575)
               

               
               83-1692, gnl|Hg17|chr14 (58184745-58183137)
               

               
               83-1692, gnl|Mm7|chr12 (69263886-69262265)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	83-1692, gnl\|bosTau2\|chr10 (47704960-47706575)
	83-1692, gnl\|Hg17\|chr14 (58184745-58183137)
	83-1692, gnl\|Mm7\|chr12 (69263886-69262265)

	cbe (0.239234)
	aor (0.195274)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	fat (0.147427)
	lyg (0.133103)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)