Ss1.1-Pig4-TMW8038H06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAATTAAAAGTCTTTAAAAATTAAATCCTAATCCCTTAGTATATGGAAAAATTTGCATT TAAAATAAGTCTGCAACTTTAACAAGCACCTGCTATATTCTTGAGGTAAAACAAGCTGGG GTTGGGGTGGTGGTGAACAGACGAGACAAAGGAAAAATGTGGAAGAGAGTGACCCAAGAG AGTAAATAACTTTTGCTTTATTAGGCGCCAAGTCAAATCTTGACTGTAGAAGGAATTACT ACCTGGCCCAATCGTTTCACTACAGATAGGGGCCAGAGAGAAAAAATACATTGTACAGTT GACAAGAGTTAGTGCCAGAGCTGAGACAACCCAACCCTCTAGGTTTCCACCTTTTTTCAT CATACAAAGTGGTTACCGTGTGCTGTCAACAAAGAATTAAACTAATCAAGTCTGACACCA GCAAGGAAACAGACATTTGTCATAACATGTATTCTTACAAACACAACTGAGGCTCACCTC GTTACCTAGATCGTTTAAATCATTAAAGGACTTTAAAAAGAGCAGTGTAGCAACATGGTT AGAACAATTTCATTTCCCCCATGTATACCTCTCAAATTATTAGGAAACTGTACTTTTTAA TTTCAGTGATAGCCAAATTCCACATGACTTTACACAGTTTAAAGAGCTCATGAAACACTT TATGCCCTTCTCTCTAAACCAGTCAACAAATTATGGCATGCCTTAATGCCCCAACCAATG GAGATTTAATTTACCCTGCTGCTTACTTAGGACTTTCTGGTCAAATTCTCAAGGTTTCCA TTTTAGAGCTGTGTTATATATCAAAGCAGGATGATTGACGATCTTAATCTTTGCCAAACC ACCCTGAAGTATTTTCTCGTTCAAACCAACGGGAGCGGCAGCAGCCATATTTAAGCTCCT AGGAATTTTAGATGTCGAGAACACACCCTGTGCACGGGAATCAATATTACATGGTTCGCT GGGATCTGTTGTGGCTGGCCTTGGACACTTTTTGTTAACGAGTAGAATCAGAAGATCATG CGATGTTGCAGTAGGAGGATTTATCTTGGTAACTTTAGGATGCTGGTTCCATTGTAGATA TAATTATGCAAAGCTAAGAATCCAGGAAAGAGTTGCCAGAGAAGGAATTAAAAACAAGAT TTTATATGAAAGTACCCACCTTGATCCTGAAAGAAAAACCAACGGGAGCGGCAGCAGCCA TTGAGCAGTCTTGAGCATAGAAAACCCAGATAACCACTTCAGTGTGAACTACAGCAACAT TTTATGTATCATGAGAGAGCTTTCAATCAAGTAAATAAAGTACTGTGTCAAGTTGAAAAA AAAAAAAAAAAATCTGACTATCTACCCCATTACTGTGGTCCTGTATCTCATCATACGTAG CATACCGAGTGTTCCACATGGTTCCCTGCAGTAAGCAGTGAGCACCGATGTCCAACAAAT TCTCAGGTTGCCTTAAGAACCAATGACAACTGCTATTACTGTACCCTGTTAAAAATTAAG GGCTACTTCCTGGTTTCTATCAGACTTAAAACTAATTATAGACTGTCACTTTGCAGTTGT TATTTTTAAAATGTACCCCACTGCTTGACACTATTCTTCCATTCCAACAGGCAAGTCATC TCTCAGCAAAGGCTTTTGGCTGGTCTAAATACTTTTTTCAAGTAGGAAAGTGTTTTTTAC TTAAGTAGAATTTAAATATGCACATGGTATGCATGAAAGTATTTTCAGAACATGTTTGGT GCAAAGGAAAAAACTGCAGAACTAGTCATATTAATGTAAAGACATGGAGATAGAAAAACA AAACTCCACACCCAACAAAATCCACAGCATTCATTTACAGTTTTAATATCAACATTACTT TTCAAAAAATAAAGCACAAGCTCAGAAACCTTCCTAAGGAATGATAAATATGAAAAAAGA CACCAGTGTCTTAAGATAGTGGCATTATTTATTATTGGTCCTACTGATTACCACAGTGAG CTAAGCAGAGCAAGGAACAGATGTCTTGAAACTGTATTCTGTTCCATTATCCCTTTTCAG GATAGGTGGAGCTTGCTCTGGTTCACCTCAGCAGAGAGGCAGCATTTTCCCTCCCATGCC CACTTTCTCATGGCTGTCCTAAGAGGTGTGTGTGTGTGTGTGTGTTACCAAATGAGTGAC TGCCAGACATGCTCTAAGAGATTTTTATTGATCCTAACCATCTGGCAGCCACCAAAGGAA GGACCTGGACATTGATTAGGGAAGGCTATTAGGAGAATGCAGTTTGCAAGATCACCTGCC TACTGTTGCTGACACAAAGCTGCGTGCAGTCTCCATGACCCAAGGTCAGAGGCAGCACTC ACTGCATGAGTCCGGGTGCCAGAGACTGAGAAGTCATCAAGTCAGATATTTAACAGTGTG TGAAGCCACTTAAAGTTCTCAGCTTCAGTTTAATAACCATGTGACATAAAGTCAGCAAAT GGATTAAGTAACTCAAATCCCTTCTAGCTTGAGCCACTATGATTAGATCTTACCCTGAGT AAGAGAAACCTCTCTGGGCTGGGCTGGTCAAACTTCCAAGGCCTTCACCAATTACAAGGT TAGTTCATTTTCTCAGCAAAATGACTGCATAACTGGAGATCTTCCACACCCACTGGGAGC CTCCAGCTGCACTGCTTCCTTCCATTAAATCCGAAATTTCATACTAGGTGATAGAGCAGT TGGTACCAGCTAAATAGCTGATTAAAATAGAATTGTCGTCATTAGTAGGTTTAAAACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAATTAAAAGTCTTTAAAAATTAAATCCTAATCCCTTAGTATATGGAAAAATTTGCATT TAAAATAAGTCTGCAACTTTAACAAGCACCTGCTATATTCTTGAGGTAAAACAAGCTGGG GTTGGGGTGGTGGTGAACAGACGAGACAAAGGAAAAATGTGGAAGAGAGTGACCCAAGAG AGTAAATAACTTTTGCTTTATTAGGCGCCAAGTCAAATCTTGACTGTAGAAGGAATTACT ACCTGGCCCAATCGTTTCACTACAGATAGGGGCCAGAGAGAAAAAATACATTGTACAGTT GACAAGAGTTAGTGCCAGAGCTGAGACAACCCAACCCTCTAGGTTTCCACCTTTTTTCAT CATACAAAGTGGTTACCGTGTGCTGTCAACAAAGAATTAAACTAATCAAGTCTGACACCA GCAAGGAAACAGACATTTGTCATAACATGTATTCTTACAAACACAACTGAGGCTCACCTC GTTACCTAGATCGTTTAAATCATTAAAGGACTTTAAAAAGAGCAGTGTAGCAACATGGTT AGAACAATTTCATTTCCCCCATGTATACCTCTCAAATTATTAGGAAACTGTACTTTTTAA TTTCAGTGATAGCCAAATTCCACATGACTTTACACAGTTTAAAGAGCTCATGAAACACTT TATGCCCTTCTCTCTAAACCAGTCAACAAATTATGGCATGCCTTAATGCCCCAACCAATG GAGATTTAATTTACCCTGCTGCTTACTTAGGACTTTCTGGTCAAATTCTCAAGGTTTCCA TTTTAGAGCTGTGTTATATATCAAAGCAGGATGATTGACGATCTTAATCTTTGCCAAACC ACCCTGAAGTATTTTCTCGTTCAAACCAACGGGAGCGGCAGCAGCCATATTTAAGCTCCT AGGAATTTTAGATGTCGAGAACACACCCTGTGCACGGGAATCAATATTACATGGTTCGCT GGGATCTGTTGTGGCTGGCCTTGGACACTTTTTGTTAACGAGTAGAATCAGAAGATCATG CGATGTTGCAGTAGGAGGATTTATCTTGGTAACTTTAGGATGCTGGTTCCATTGTAGATA TAATTATGCAAAGCTAAGAATCCAGGAAAGAGTTGCCAGAGAAGGAATTAAAAACAAGAT TTTATATGAAAGTACCCACCTTGATCCTGAAAGAAAAACCAACGGGAGCGGCAGCAGCCA TTGAGCAGTCTTGAGCATAGAAAACCCAGATAACCACTTCAGTGTGAACTACAGCAACAT TTTATGTATCATGAGAGAGCTTTCAATCAAGTAAATAAAGTACTGTGTCAAGTTGAAAAA AAAAAAAAAAAATCTGACTATCTACCCCATTACTGTGGTCCTGTATCTCATCATACGTAG CATACCGAGTGTTCCACATGGTTCCCTGCAGTAAGCAGTGAGCACCGATGTCCAACAAAT TCTCAGGTTGCCTTAAGAACCAATGACAACTGCTATTACTGTACCCTGTTAAAAATTAAG GGCTACTTCCTGGTTTCTATCAGACTTAAAACTAATTATAGACTGTCACTTTGCAGTTGT TATTTTTAAAATGTACCCCACTGCTTGACACTATTCTTCCATTCCAACAGGCAAGTCATC TCTCAGCAAAGGCTTTTGGCTGGTCTAAATACTTTTTTCAAGTAGGAAAGTGTTTTTTAC TTAAGTAGAATTTAAATATGCACATGGTATGCATGAAAGTATTTTCAGAACATGTTTGGT GCAAAGGAAAAAACTGCAGAACTAGTCATATTAATGTAAAGACATGGAGATAGAAAAACA AAACTCCACACCCAACAAAATCCACAGCATTCATTTACAGTTTTAATATCAACATTACTT TTCAAAAAATAAAGCACAAGCTCAGAAACCTTCCTAAGGAATGATAAATATGAAAAAAGA CACCAGTGTCTTAAGATAGTGGCATTATTTATTATTGGTCCTACTGATTACCACAGTGAG CTAAGCAGAGCAAGGAACAGATGTCTTGAAACTGTATTCTGTTCCATTATCCCTTTTCAG GATAGGTGGAGCTTGCTCTGGTTCACCTCAGCAGAGAGGCAGCATTTTCCCTCCCATGCC CACTTTCTCATGGCTGTCCTAAGAGGTGTGTGTGTGTGTGTGTGTTACCAAATGAGTGAC TGCCAGACATGCTCTAAGAGATTTTTATTGATCCTAACCATCTGGCAGCCACCAAAGGAA GGACCTGGACATTGATTAGGGAAGGCTATTAGGAGAATGCAGTTTGCAAGATCACCTGCC TACTGTTGCTGACACAAAGCTGCGTGCAGTCTCCATGACCCAAGGTCAGAGGCAGCACTC ACTGCATGAGTCCGGGTGCCAGAGACTGAGAAGTCATCAAGTCAGATATTTAACAGTGTG TGAAGCCACTTAAAGTTCTCAGCTTCAGTTTAATAACCATGTGACATAAAGTCAGCAAAT GGATTAAGTAACTCAAATCCCTTCTAGCTTGAGCCACTATGATTAGATCTTACCCTGAGT AAGAGAAACCTCTCTGGGCTGGGCTGGTCAAACTTCCAAGGCCTTCACCAATTACAAGGT TAGTTCATTTTCTCAGCAAAATGACTGCATAACTGGAGATCTTCCACACCCACTGGGAGC CTCCAGCTGCACTGCTTCCTTCCATTAAATCCGAAATTTCATACTAGGTGATAGAGCAGT TGGTACCAGCTAAATAGCTGATTAAAATAGAATTGTCGTCATTAGTAGGTTTAAAACTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 234-1003, gnl|bosTau2|chr16 (20511621-20512421) | |
| 234-1003, gnl|Hg17|chr1 (241330524-241331403) | |
| 1004-1333, gnl|bosTau2|chrX (388215-388541) | |
| 1004-1333, gnl|Mm7|chr7 (96626667-96626965) | |
| 1065-1296, gnl|bosTau2|chr16 (20512995-20513247) | |
| 1065-1296, gnl|canFam2|chr12 (27113291-27113447) | |
| 1065-1296, gnl|canFam2|chr12 (27113291-27113493) | |
| 1065-1296, gnl|dasNov1|scaffold_34449 (7745-7596) | |
| 1065-1296, gnl|dasNov1|scaffold_34449 (7745-7545) | |
| 1065-1296, gnl|echTel1|scaffold_298377 (3394-3526) | |
| 1065-1296, gnl|echTel1|scaffold_298377 (3394-3581) | |
| 1065-1296, gnl|Hg17|chr1 (241332383-241332608) | |
| 1065-1296, gnl|hg17|chr10 (70062355-70062550) | |
| 1065-1296, gnl|hg17|chr2 (231648036-231648192) | |
| 1065-1296, gnl|loxAfr1|scaffold_42364 (7612-7771) | |
| 1065-1296, gnl|loxAfr1|scaffold_42364 (7612-7827) | |
| 1065-1296, gnl|mm7|chr7 (96626729-96626879) | |
| 1065-1296, gnl|mm7|chr7 (96626729-96626914) | |
| 1065-1296, gnl|monDom2|scaffold_13 (38655471-38655310) | |
| 1065-1296, gnl|monDom2|scaffold_98 (3502100-3502309) | |
| 1065-1296, gnl|oryCun1|scaffold_179014 (8180-8030) | |
| 1065-1296, gnl|oryCun1|scaffold_83123 (411-598) | |
| 1065-1296, gnl|panTro1|chr1 (225344096-225344291) | |
| 1065-1296, gnl|panTro1|chr13 (122278301-122278457) | |
| 1065-1296, gnl|rheMac2|chr12 (94805328-94805484) | |
| 1065-1296, gnl|rheMac2|chr12 (94805328-94805537) | |
| 1065-1296, gnl|rn3|chr14 (7791156-7791031) | |
| 1065-1296, gnl|rn3|chr14 (7791156-7790976) | |
| 1448-1777, gnl|bosTau2|chr16 (20513454-20513800) | |
| 1448-1777, gnl|Hg17|chr1 (241332848-241333180) | |
| 1794-2115, gnl|bosTau2|chr16 (20513845-20514149) | |
| 1794-2115, gnl|Hg17|chr1 (241333229-241333617) | |
| 2180-2622, gnl|bosTau2|chr16 (20514353-20514773) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 234-1003, gnl|bosTau2|chr16 (20511621-20512421) | |
| 234-1003, gnl|Hg17|chr1 (241330524-241331403) | |
| 1004-1333, gnl|bosTau2|chrX (388215-388541) | |
| 1004-1333, gnl|Mm7|chr7 (96626667-96626965) | |
| 1065-1296, gnl|bosTau2|chr16 (20512995-20513247) | |
| 1065-1296, gnl|canFam2|chr12 (27113291-27113447) | |
| 1065-1296, gnl|canFam2|chr12 (27113291-27113493) | |
| 1065-1296, gnl|dasNov1|scaffold_34449 (7745-7596) | |
| 1065-1296, gnl|dasNov1|scaffold_34449 (7745-7545) | |
| 1065-1296, gnl|echTel1|scaffold_298377 (3394-3526) | |
| 1065-1296, gnl|echTel1|scaffold_298377 (3394-3581) | |
| 1065-1296, gnl|Hg17|chr1 (241332383-241332608) | |
| 1065-1296, gnl|hg17|chr10 (70062355-70062550) | |
| 1065-1296, gnl|hg17|chr2 (231648036-231648192) | |
| 1065-1296, gnl|loxAfr1|scaffold_42364 (7612-7771) | |
| 1065-1296, gnl|loxAfr1|scaffold_42364 (7612-7827) | |
| 1065-1296, gnl|mm7|chr7 (96626729-96626879) | |
| 1065-1296, gnl|mm7|chr7 (96626729-96626914) | |
| 1065-1296, gnl|monDom2|scaffold_13 (38655471-38655310) | |
| 1065-1296, gnl|monDom2|scaffold_98 (3502100-3502309) | |
| 1065-1296, gnl|oryCun1|scaffold_179014 (8180-8030) | |
| 1065-1296, gnl|oryCun1|scaffold_83123 (411-598) | |
| 1065-1296, gnl|panTro1|chr1 (225344096-225344291) | |
| 1065-1296, gnl|panTro1|chr13 (122278301-122278457) | |
| 1065-1296, gnl|rheMac2|chr12 (94805328-94805484) | |
| 1065-1296, gnl|rheMac2|chr12 (94805328-94805537) | |
| 1065-1296, gnl|rn3|chr14 (7791156-7791031) | |
| 1065-1296, gnl|rn3|chr14 (7791156-7790976) | |
| 1448-1777, gnl|bosTau2|chr16 (20513454-20513800) | |
| 1448-1777, gnl|Hg17|chr1 (241332848-241333180) | |
| 1794-2115, gnl|bosTau2|chr16 (20513845-20514149) | |
| 1794-2115, gnl|Hg17|chr1 (241333229-241333617) | |
| 2180-2622, gnl|bosTau2|chr16 (20514353-20514773) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| liv (0.585137) | |
| pro (0.512033) | |
| thg (0.507164) | |
| cbe (0.478469) | |
| lnt (0.426925) | |
| mas (0.42061) | |
| nca (0.410621) | |
| col (0.390016) | |
| elu (0.385356) | |
| sin (0.349895) | |
| med (0.348756) | |
| eye (0.341006) | |
| cte (0.29274) | |
| ova (0.258264) | |
| eru (0.240096) | |
| spc (0.226732) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| pro (0.512033) | |
| thg (0.507164) | |
| cbe (0.478469) | |
| lnt (0.426925) | |
| mas (0.42061) | |
| nca (0.410621) | |
| col (0.390016) | |
| elu (0.385356) | |
| sin (0.349895) | |
| med (0.348756) | |
| eye (0.341006) | |
| cte (0.29274) | |
| ova (0.258264) | |
| eru (0.240096) | |
| spc (0.226732) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fty (0.17584) | |
| ill (0.175593) | |
| rec (0.17307) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |