Non-Coding RNA Search

Ss1.1-Pig4-TMW8038H08.3.5

Sequence:


               
               AGTACTCCAAAATGAACTACCTGGACATTCTCGTGCGGGCTTCCATTGATATGACTGCTG
CCACCGAGAATATCAAGCTGCCAAACGCAGGCACTCAGGTTCGTGTGACTGTGTTTCCCT
CAAAGACTGCGGCTCAGTATTCAGGAGTCCCTTGGTGGATCATTCTAGTGGCTATTCTTG
CTGGGATTTTGATGCTTGCTCTATTAGTGTTTTTACTATGGAAGTGTGGTTTCTTCAAGA
GAAATAAGAAAGATCATTATGATGCCACATATCACAAGGCTGAGATCCATGCTCAGCCGT
CTGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTACTTCTGTAATTGTGTGGA
TTCTTTAAACGCTCTAGGTACGACGATAGCGTTCCCCGATACCATGCTGTAAGGATCCGG
AAAGAGGAGCGAGAGATCAAAGATGAAAAATATAATGATAACCTCGAAAAAAAACAGTGG
ATCACAAGGTGGAATGAAAATGAAAGCTACTCCTAGGGGGGGCCACAAAAGCTTCACAAT
ATCCAAACTGCTTATTTTTTTTCCCTCCAACTCAGAAAATCAAATGGATGTAACAGCCTG
TTCAATACCTGAATATTGATTTCAGACAGACTACACACAGTACGAGCCTACAGTTTTAGC
TGTGGACATTGTCACATGGCCTGAGGCTCCTGTTTTGCACAGCCAAATTTGAGGCTGTTG
GAATGGATTTGTCTTTAACTGCCTTAATTTCACGTTCCGGGTTGCCTTTGTTTTTGGTGT
GACTGACTTCCCTGTGCTGGGGAAGGGCCTGCCCCATTACACTCACATGACATCCTCCCC
ATAGCATAGCTGGAAGAAGGCCACCGTCGCCGCGCCAACAGAGTGACCGTCCCAGCCACG
GCATTGCCTCTGCAAACACTCTTCTAGGACTGGAGAACCTGCATGTAAACTGTCCTGCAT
CACAAGACGGCACCATCAGGGTAGTTGTGTTCGATTTAAAGTGCTCTCATAAATTAAATG
TGCAATAGAAGGTGATGTTGCCATCCTGCCCTCTTTTTCCATTTCCTAGACGTGTGAATA
CCTGCTCACGCCAAATACATACAGGTTTTTCATTCCCCTTTCACTAAAACACACGGGCAT
AACAGATTTGAATGCTAGGTATACTTATTTGTGTATGGTATTTATTTTTTTTTTATGAAC
CATTTTGTTACCGACTAACAGGCCAAAGATTCTCCAGTTTACCCTTGAGGTTGGATTAAG
CAATCAGAGTTAGAACATGAGAGGTCATGGGTTGGACCTGAGTTACTGACTGCAAAAAAG
AAGATAATACGTCTTTGTATATGTACCAGAGAGTTGTTCTACTTTACAGATGTTTTAAGT
TATTAAAAATCTCCCTTCATGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACTCCAAAATGAACTACCTGGACATTCTCGTGCGGGCTTCCATTGATATGACTGCTG
CCACCGAGAATATCAAGCTGCCAAACGCAGGCACTCAGGTTCGTGTGACTGTGTTTCCCT
CAAAGACTGCGGCTCAGTATTCAGGAGTCCCTTGGTGGATCATTCTAGTGGCTATTCTTG
CTGGGATTTTGATGCTTGCTCTATTAGTGTTTTTACTATGGAAGTGTGGTTTCTTCAAGA
GAAATAAGAAAGATCATTATGATGCCACATATCACAAGGCTGAGATCCATGCTCAGCCGT
CTGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTACTTCTGTAATTGTGTGGA
TTCTTTAAACGCTCTAGGTACGACGATAGCGTTCCCCGATACCATGCTGTAAGGATCCGG
AAAGAGGAGCGAGAGATCAAAGATGAAAAATATAATGATAACCTCGAAAAAAAACAGTGG
ATCACAAGGTGGAATGAAAATGAAAGCTACTCCTAGGGGGGGCCACAAAAGCTTCACAAT
ATCCAAACTGCTTATTTTTTTTCCCTCCAACTCAGAAAATCAAATGGATGTAACAGCCTG
TTCAATACCTGAATATTGATTTCAGACAGACTACACACAGTACGAGCCTACAGTTTTAGC
TGTGGACATTGTCACATGGCCTGAGGCTCCTGTTTTGCACAGCCAAATTTGAGGCTGTTG
GAATGGATTTGTCTTTAACTGCCTTAATTTCACGTTCCGGGTTGCCTTTGTTTTTGGTGT
GACTGACTTCCCTGTGCTGGGGAAGGGCCTGCCCCATTACACTCACATGACATCCTCCCC
ATAGCATAGCTGGAAGAAGGCCACCGTCGCCGCGCCAACAGAGTGACCGTCCCAGCCACG
GCATTGCCTCTGCAAACACTCTTCTAGGACTGGAGAACCTGCATGTAAACTGTCCTGCAT
CACAAGACGGCACCATCAGGGTAGTTGTGTTCGATTTAAAGTGCTCTCATAAATTAAATG
TGCAATAGAAGGTGATGTTGCCATCCTGCCCTCTTTTTCCATTTCCTAGACGTGTGAATA
CCTGCTCACGCCAAATACATACAGGTTTTTCATTCCCCTTTCACTAAAACACACGGGCAT
AACAGATTTGAATGCTAGGTATACTTATTTGTGTATGGTATTTATTTTTTTTTTATGAAC
CATTTTGTTACCGACTAACAGGCCAAAGATTCTCCAGTTTACCCTTGAGGTTGGATTAAG
CAATCAGAGTTAGAACATGAGAGGTCATGGGTTGGACCTGAGTTACTGACTGCAAAAAAG
AAGATAATACGTCTTTGTATATGTACCAGAGAGTTGTTCTACTTTACAGATGTTTTAAGT
TATTAAAAATCTCCCTTCATGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|239158|gb|AAB20354.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|239158|gb|AAB20354.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               623-741, - strand, RNAz p=0.620862
               

               
               782-896, + strand, RNAz p=0.702178

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               623-741, - strand, RNAz p=0.620862
               

               
               782-896, + strand, RNAz p=0.702178

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000210, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000210, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               97-224, gnl|bosTau2|chr2 (17144689-17144562)
               

               
               97-224, gnl|Hg17|chr2 (173188208-173188335)
               

               
               97-224, gnl|Mm7|chr2 (71693089-71693216)
               


               
               354-1404, gnl|bosTau2|chr2 (17139831-17138788)
               

               
               354-1404, gnl|Hg17|chr2 (173194325-173195352)
               

               
               354-1404, gnl|Mm7|chr2 (71699563-71700558)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-224, gnl|bosTau2|chr2 (17144689-17144562)
               

               
               97-224, gnl|Hg17|chr2 (173188208-173188335)
               

               
               97-224, gnl|Mm7|chr2 (71693089-71693216)
               


               
               354-1404, gnl|bosTau2|chr2 (17139831-17138788)
               

               
               354-1404, gnl|Hg17|chr2 (173194325-173195352)
               

               
               354-1404, gnl|Mm7|chr2 (71699563-71700558)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.383362)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	623-741, - strand, RNAz p=0.620862
	782-896, + strand, RNAz p=0.702178

	97-224, gnl\|bosTau2\|chr2 (17144689-17144562)
	97-224, gnl\|Hg17\|chr2 (173188208-173188335)
	97-224, gnl\|Mm7\|chr2 (71693089-71693216)

	354-1404, gnl\|bosTau2\|chr2 (17139831-17138788)
	354-1404, gnl\|Hg17\|chr2 (173194325-173195352)
	354-1404, gnl\|Mm7\|chr2 (71699563-71700558)