Non-Coding RNA Search

Ss1.1-Pig4-TMW8038H13.3

Sequence:


               
               TGAATTTTATGTATGAAGAATCACTGACAGTAACTTCTTTTGAATGTGAAGTTCTTCTCA
GTACATTTTGGACAGGCCTAAAAGGCATGGGATGATGATAGAAATGCTGAGTTATTTTTC
ATACTAAAACTTGCGTGTATTCACAGTTTAATGTTAATCAGCTCAGATATGAACAAAGGT
GTTTCTAGAATGGCTCTCCTCTGAAACAGCAATAGTCACAAATGCCAAGGCCGATGTTTC
CTTCAGGGTGCCAGTGGAAACAAGAAAAGATTATCTAACATCCTACGAAAAGGATGGCAA
AGTGCCCCCGCCCCACCGAGAAAATTTGGATCTTTTCTTTAATAAAGCAGGGCTATAGTA
TCTTAAATATACATTTGCTTGTTAGAACATACTAAGTAAGATGTATTTATTTGCCACCAG
TATTTAACATTTTGTGCACATTTTCTTTACTACATTCTTTCATATTCTGACTCAAAGTGG
ATAGGCTAGTGTTCGTTTTGGAGTGAAAATATACTCTTAAGAGCTAGTTCTTCTGCTGAG
CCGGAGAAGCTTTTTTTCTCTGTCCTTACTGATTTTATCTAATTCAGAAAAGGTGACAAT
ATCTCAATTTTGATGTTGACCTCTCTCTACAGCTTTCTAAGTGCAAGAAGTTCTCACAGG
TGTCAGGTGGGACTTGACCCTGGGGAACAAGCAACAGGAACAGACCCATAAAGACGGTGA
ACTTTTCATGCATGGGGTATGGATTCTTGTTAATGGAGACCTAGATGTTTTTCTTGTCTA
TAGAAAATACATATTATTGAAAAACCTTAATTTTTTTTTTAATGAATAGAGAAAAAAACA
ATGAGAAAACCAGATAGACCTGTTGTTAGTACTACATTTTTAAGGCATTTTATATTTGAT
GGTGCCGTACTTTTAATAATAAAACTGAAGTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATTTTATGTATGAAGAATCACTGACAGTAACTTCTTTTGAATGTGAAGTTCTTCTCA
GTACATTTTGGACAGGCCTAAAAGGCATGGGATGATGATAGAAATGCTGAGTTATTTTTC
ATACTAAAACTTGCGTGTATTCACAGTTTAATGTTAATCAGCTCAGATATGAACAAAGGT
GTTTCTAGAATGGCTCTCCTCTGAAACAGCAATAGTCACAAATGCCAAGGCCGATGTTTC
CTTCAGGGTGCCAGTGGAAACAAGAAAAGATTATCTAACATCCTACGAAAAGGATGGCAA
AGTGCCCCCGCCCCACCGAGAAAATTTGGATCTTTTCTTTAATAAAGCAGGGCTATAGTA
TCTTAAATATACATTTGCTTGTTAGAACATACTAAGTAAGATGTATTTATTTGCCACCAG
TATTTAACATTTTGTGCACATTTTCTTTACTACATTCTTTCATATTCTGACTCAAAGTGG
ATAGGCTAGTGTTCGTTTTGGAGTGAAAATATACTCTTAAGAGCTAGTTCTTCTGCTGAG
CCGGAGAAGCTTTTTTTCTCTGTCCTTACTGATTTTATCTAATTCAGAAAAGGTGACAAT
ATCTCAATTTTGATGTTGACCTCTCTCTACAGCTTTCTAAGTGCAAGAAGTTCTCACAGG
TGTCAGGTGGGACTTGACCCTGGGGAACAAGCAACAGGAACAGACCCATAAAGACGGTGA
ACTTTTCATGCATGGGGTATGGATTCTTGTTAATGGAGACCTAGATGTTTTTCTTGTCTA
TAGAAAATACATATTATTGAAAAACCTTAATTTTTTTTTTAATGAATAGAGAAAAAAACA
ATGAGAAAACCAGATAGACCTGTTGTTAGTACTACATTTTTAAGGCATTTTATATTTGAT
GGTGCCGTACTTTTAATAATAAAACTGAAGTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33338008|gb|AAQ13626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33338008|gb|AAQ13626.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               263-354, - strand, RNAz p=0.999943
               

               
               644-756, + strand, RNAz p=0.564918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-354, - strand, RNAz p=0.999943
               

               
               644-756, + strand, RNAz p=0.564918

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC039106, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC039106, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-172, gnl|bosTau2|chr7 (48596348-48596514)
               

               
               1-172, gnl|Hg17|chr5 (159437468-159437258)
               

               
               1-172, gnl|Mm7|chr11 (43677234-43677393)
               


               
               263-936, gnl|bosTau2|chr7 (48596507-48597187)
               

               
               263-936, gnl|canFam2|chr4 (53798279-53797637)
               

               
               263-936, gnl|dasNov1|scaffold_61033 (2899-2185)
               

               
               263-936, gnl|echTel1|scaffold_308717 (27750-28402)
               

               
               263-936, gnl|hg17|chr5 (159436504-159437209)
               

               
               263-936, gnl|Hg17|chr5 (159437304-159436514)
               

               
               263-936, gnl|loxAfr1|scaffold_8506 (79382-78666)
               

               
               263-936, gnl|mm7|chr11 (43678174-43677484)
               

               
               263-936, gnl|Mm7|chr11 (43677386-43678162)
               

               
               263-936, gnl|monDom2|scaffold_6 (44794828-44794106)
               

               
               263-936, gnl|oryCun1|scaffold_94041 (3621-2934)
               

               
               263-936, gnl|panTro1|chr4 (166608605-166609307)
               

               
               263-936, gnl|rheMac2|chr6 (156464128-156464827)
               

               
               263-936, gnl|rn3|chr10 (28828989-28828296)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr7 (48596348-48596514)
               

               
               1-172, gnl|Hg17|chr5 (159437468-159437258)
               

               
               1-172, gnl|Mm7|chr11 (43677234-43677393)
               


               
               263-936, gnl|bosTau2|chr7 (48596507-48597187)
               

               
               263-936, gnl|canFam2|chr4 (53798279-53797637)
               

               
               263-936, gnl|dasNov1|scaffold_61033 (2899-2185)
               

               
               263-936, gnl|echTel1|scaffold_308717 (27750-28402)
               

               
               263-936, gnl|hg17|chr5 (159436504-159437209)
               

               
               263-936, gnl|Hg17|chr5 (159437304-159436514)
               

               
               263-936, gnl|loxAfr1|scaffold_8506 (79382-78666)
               

               
               263-936, gnl|mm7|chr11 (43678174-43677484)
               

               
               263-936, gnl|Mm7|chr11 (43677386-43678162)
               

               
               263-936, gnl|monDom2|scaffold_6 (44794828-44794106)
               

               
               263-936, gnl|oryCun1|scaffold_94041 (3621-2934)
               

               
               263-936, gnl|panTro1|chr4 (166608605-166609307)
               

               
               263-936, gnl|rheMac2|chr6 (156464128-156464827)
               

               
               263-936, gnl|rn3|chr10 (28828989-28828296)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               gul (0.532765)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	263-354, - strand, RNAz p=0.999943
	644-756, + strand, RNAz p=0.564918

	1-172, gnl\|bosTau2\|chr7 (48596348-48596514)
	1-172, gnl\|Hg17\|chr5 (159437468-159437258)
	1-172, gnl\|Mm7\|chr11 (43677234-43677393)

	263-936, gnl\|bosTau2\|chr7 (48596507-48597187)
	263-936, gnl\|canFam2\|chr4 (53798279-53797637)
	263-936, gnl\|dasNov1\|scaffold_61033 (2899-2185)
	263-936, gnl\|echTel1\|scaffold_308717 (27750-28402)
	263-936, gnl\|hg17\|chr5 (159436504-159437209)
	263-936, gnl\|Hg17\|chr5 (159437304-159436514)
	263-936, gnl\|loxAfr1\|scaffold_8506 (79382-78666)
	263-936, gnl\|mm7\|chr11 (43678174-43677484)
	263-936, gnl\|Mm7\|chr11 (43677386-43678162)
	263-936, gnl\|monDom2\|scaffold_6 (44794828-44794106)
	263-936, gnl\|oryCun1\|scaffold_94041 (3621-2934)
	263-936, gnl\|panTro1\|chr4 (166608605-166609307)
	263-936, gnl\|rheMac2\|chr6 (156464128-156464827)
	263-936, gnl\|rn3\|chr10 (28828989-28828296)

	gul (0.532765)
	thg (0.253582)
	ece (0.229305)
	aor (0.195274)
	ste (0.135208)
	sug (0.127291)
	spc (0.113366)