Non-Coding RNA Search

Ss1.1-Pig4-TMW8038H15.5

Sequence:


               
               TGCTGCCGCCTCACGCGGTACAGGACCTGCACGTGGCCGTGAGGCCCCTCCGGCCTGGCA
GCCGGTTCGTGCACCTCAACCTGGTCGACGTGGATGCCCACCAGCTGGTGGCCTCGTGGC
TCGTGTGCCTCTCCTGCCGCCTGCCTCTCATCTCCAAGGCCTTCGAGATCACGCTGGCTG
CGGGGGGAGCAAAGGGCGCCCACAAACGCATCACCTACACCAACCCCTACCCGACGCGGA
GGGCCTACCGCCTGTGCAGTGACCACCCTGACCTGCTGCGCTTCCAGGAGGATGCCTTCC
AGGTCGGGGGAGGAGAGACCTACACCATCGGCCTGCGGTTCGTGCCCCGTCAGCGGGCCG
GGGAGGAGGAGATTCTGGTCTACATCAACGACCGCGAGGACAAAACTGAGGAGGCCTTCT
GCGTGAAAGTCTCCTACCAGTGAAGGCTGCCCCGGTGCCGACTCGGCGCCCCCGCCTCCG
CCATGGGTTCCCGGTGCCCAGGCCAGCAGGGCCGCTGCCGGTGCCAGGCGCGTGGCAGGC
CCCGCCAGGCCCCAAAGCCCGTCCCTCCCCGAGGCACCAGGGTGATTGTCACCCCCGATG
ACATTAGGGTTTGCTCTCAGCGAAATGTATTTTAGGAATCTTTTTAAATGACAAAATTAT
GTTTTTTTACTGAGTTTTGTACAAACCATATTATTTGCTATGTAATATTTTATACTGGTA
TATTTTTTCAAAAAGTTCTATGAAATATTAAATTTTTACAAGTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGCCGCCTCACGCGGTACAGGACCTGCACGTGGCCGTGAGGCCCCTCCGGCCTGGCA
GCCGGTTCGTGCACCTCAACCTGGTCGACGTGGATGCCCACCAGCTGGTGGCCTCGTGGC
TCGTGTGCCTCTCCTGCCGCCTGCCTCTCATCTCCAAGGCCTTCGAGATCACGCTGGCTG
CGGGGGGAGCAAAGGGCGCCCACAAACGCATCACCTACACCAACCCCTACCCGACGCGGA
GGGCCTACCGCCTGTGCAGTGACCACCCTGACCTGCTGCGCTTCCAGGAGGATGCCTTCC
AGGTCGGGGGAGGAGAGACCTACACCATCGGCCTGCGGTTCGTGCCCCGTCAGCGGGCCG
GGGAGGAGGAGATTCTGGTCTACATCAACGACCGCGAGGACAAAACTGAGGAGGCCTTCT
GCGTGAAAGTCTCCTACCAGTGAAGGCTGCCCCGGTGCCGACTCGGCGCCCCCGCCTCCG
CCATGGGTTCCCGGTGCCCAGGCCAGCAGGGCCGCTGCCGGTGCCAGGCGCGTGGCAGGC
CCCGCCAGGCCCCAAAGCCCGTCCCTCCCCGAGGCACCAGGGTGATTGTCACCCCCGATG
ACATTAGGGTTTGCTCTCAGCGAAATGTATTTTAGGAATCTTTTTAAATGACAAAATTAT
GTTTTTTTACTGAGTTTTGTACAAACCATATTATTTGCTATGTAATATTTTATACTGGTA
TATTTTTTCAAAAAGTTCTATGAAATATTAAATTTTTACAAGTCTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15929957|gb|AAH15402.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15929957|gb|AAH15402.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-162, - strand, RNAz p=0.619974

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-162, - strand, RNAz p=0.619974

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-162, gnl|bosTau2|chr16 (33081609-33081770)
               

               
               1-162, gnl|Hg17|chr1 (5858821-5858660)
               

               
               1-162, gnl|Mm7|chr4 (151551138-151551298)
               


               
               297-446, gnl|bosTau2|chr16 (33082816-33082965)
               

               
               297-446, gnl|Hg17|chr1 (5857737-5857584)
               

               
               297-446, gnl|Mm7|chr4 (151552174-151552319)
               


               
               552-768, gnl|bosTau2|chr16 (33083159-33083374)
               

               
               552-768, gnl|canFam2|chr5 (62819748-62819917)
               

               
               552-768, gnl|echTel1|scaffold_250148 (164-326)
               

               
               552-768, gnl|hg17|chr1 (5857131-5857297)
               

               
               552-768, gnl|Hg17|chr1 (5857345-5857144)
               

               
               552-768, gnl|loxAfr1|scaffold_44736 (8124-7961)
               

               
               552-768, gnl|mm7|chr4 (151552738-151552550)
               

               
               552-768, gnl|Mm7|chr4 (151552485-151552720)
               

               
               552-768, gnl|monDom2|scaffold_78 (2843139-2842966)
               

               
               552-768, gnl|oryCun1|scaffold_98906 (661-826)
               

               
               552-768, gnl|panTro1|chr1 (5777811-5777977)
               

               
               552-768, gnl|rheMac2|chr1 (8854088-8854252)
               

               
               552-768, gnl|rn3|chr5 (169807688-169807502)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr16 (33081609-33081770)
               

               
               1-162, gnl|Hg17|chr1 (5858821-5858660)
               

               
               1-162, gnl|Mm7|chr4 (151551138-151551298)
               


               
               297-446, gnl|bosTau2|chr16 (33082816-33082965)
               

               
               297-446, gnl|Hg17|chr1 (5857737-5857584)
               

               
               297-446, gnl|Mm7|chr4 (151552174-151552319)
               


               
               552-768, gnl|bosTau2|chr16 (33083159-33083374)
               

               
               552-768, gnl|canFam2|chr5 (62819748-62819917)
               

               
               552-768, gnl|echTel1|scaffold_250148 (164-326)
               

               
               552-768, gnl|hg17|chr1 (5857131-5857297)
               

               
               552-768, gnl|Hg17|chr1 (5857345-5857144)
               

               
               552-768, gnl|loxAfr1|scaffold_44736 (8124-7961)
               

               
               552-768, gnl|mm7|chr4 (151552738-151552550)
               

               
               552-768, gnl|Mm7|chr4 (151552485-151552720)
               

               
               552-768, gnl|monDom2|scaffold_78 (2843139-2842966)
               

               
               552-768, gnl|oryCun1|scaffold_98906 (661-826)
               

               
               552-768, gnl|panTro1|chr1 (5777811-5777977)
               

               
               552-768, gnl|rheMac2|chr1 (8854088-8854252)
               

               
               552-768, gnl|rn3|chr5 (169807688-169807502)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	1-162, gnl\|bosTau2\|chr16 (33081609-33081770)
	1-162, gnl\|Hg17\|chr1 (5858821-5858660)
	1-162, gnl\|Mm7\|chr4 (151551138-151551298)

	297-446, gnl\|bosTau2\|chr16 (33082816-33082965)
	297-446, gnl\|Hg17\|chr1 (5857737-5857584)
	297-446, gnl\|Mm7\|chr4 (151552174-151552319)

	552-768, gnl\|bosTau2\|chr16 (33083159-33083374)
	552-768, gnl\|canFam2\|chr5 (62819748-62819917)
	552-768, gnl\|echTel1\|scaffold_250148 (164-326)
	552-768, gnl\|hg17\|chr1 (5857131-5857297)
	552-768, gnl\|Hg17\|chr1 (5857345-5857144)
	552-768, gnl\|loxAfr1\|scaffold_44736 (8124-7961)
	552-768, gnl\|mm7\|chr4 (151552738-151552550)
	552-768, gnl\|Mm7\|chr4 (151552485-151552720)
	552-768, gnl\|monDom2\|scaffold_78 (2843139-2842966)
	552-768, gnl\|oryCun1\|scaffold_98906 (661-826)
	552-768, gnl\|panTro1\|chr1 (5777811-5777977)
	552-768, gnl\|rheMac2\|chr1 (8854088-8854252)
	552-768, gnl\|rn3\|chr5 (169807688-169807502)