Non-Coding RNA Search

Ss1.1-Pig4-TMW8038H19.5

Sequence:


               
               TTCACTTTCATTTTTTTCAGCAAACACTTAACTGAATGTCTGGAACACTTTGTACCAGGC
ACTCTCCTATAAGATGGCACTGCAAAGGTGAGTAAGACAGGGATTTTTGCCTTCAAGGCG
TTACTACCATTGTAAATATTTTGGTATATAAAATATGGTGTATTTATATTTTCTTTTACA
GAGTTAAGTGATTATTATATATATATACTTATATATGCTCTCTTTTCATTTATTATAAAT
ATTTTCCCTGGTCAGCTCTTAATGTCTGCCAAATATAATTGAAACTGAAGATGGCAGGTA
AGATTTTAGGAAATAAATACTAAACACTGGTACACATACTATCTTACTTACTGAGATTAA
TATAACCCTGTTAACTTTTACATATTATGTTTTAGCATTAATTTTAATAAAATTAACTAG
AGTAACTGTACAGGTCATTTGGTGCACAGCTCACTGAGTCGTAATTACCGGCTGGATTGA
ATTGCACCTGTGCTGCCCTTCTCATGCTGCATAATGGATTGCTAGTGTTAAAGTGTGTTT
AAAGATCCATGTGGAGAAACTACACCCCTGTCCTGTCTCTGGTTAGAATGCCTGGCCCAC
CAGAGGAGATTGTCGCCCTGCACTTGGGACCAGGAAACCAAGGACTATTCCAGGATCTTA
TTCTCCCTCAGCAGTCCAAATGCAGGAGCCAACTCAGGAGAATGATATTGCAGTTGGCTT
CCATCCTGTCAGTATCTGACTTTGGGGATTTTATCTTTATTGCCTTTCATTTTTTGTTTA
TTTTTTGAGTTGAATAATTCATTGGTTTTAATTCTCACATAAAGTATTTTTAAAAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACTTTCATTTTTTTCAGCAAACACTTAACTGAATGTCTGGAACACTTTGTACCAGGC
ACTCTCCTATAAGATGGCACTGCAAAGGTGAGTAAGACAGGGATTTTTGCCTTCAAGGCG
TTACTACCATTGTAAATATTTTGGTATATAAAATATGGTGTATTTATATTTTCTTTTACA
GAGTTAAGTGATTATTATATATATATACTTATATATGCTCTCTTTTCATTTATTATAAAT
ATTTTCCCTGGTCAGCTCTTAATGTCTGCCAAATATAATTGAAACTGAAGATGGCAGGTA
AGATTTTAGGAAATAAATACTAAACACTGGTACACATACTATCTTACTTACTGAGATTAA
TATAACCCTGTTAACTTTTACATATTATGTTTTAGCATTAATTTTAATAAAATTAACTAG
AGTAACTGTACAGGTCATTTGGTGCACAGCTCACTGAGTCGTAATTACCGGCTGGATTGA
ATTGCACCTGTGCTGCCCTTCTCATGCTGCATAATGGATTGCTAGTGTTAAAGTGTGTTT
AAAGATCCATGTGGAGAAACTACACCCCTGTCCTGTCTCTGGTTAGAATGCCTGGCCCAC
CAGAGGAGATTGTCGCCCTGCACTTGGGACCAGGAAACCAAGGACTATTCCAGGATCTTA
TTCTCCCTCAGCAGTCCAAATGCAGGAGCCAACTCAGGAGAATGATATTGCAGTTGGCTT
CCATCCTGTCAGTATCTGACTTTGGGGATTTTATCTTTATTGCCTTTCATTTTTTGTTTA
TTTTTTGAGTTGAATAATTCATTGGTTTTAATTCTCACATAAAGTATTTTTAAAAATCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               632-742, - strand, RNAz p=0.72104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               632-742, - strand, RNAz p=0.72104

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-260, gnl|bosTau2|chr1 (82330703-82330956)
               

               
               1-260, gnl|Hg17|chr3 (139362874-139362627)
               


               
               482-742, gnl|bosTau2|chr1 (82332357-82332621)
               

               
               482-742, gnl|canFam2|chr23 (37430150-37430510)
               

               
               482-742, gnl|echTel1|scaffold_291222 (12572-12313)
               

               
               482-742, gnl|hg17|chr3 (139361711-139362103)
               

               
               482-742, gnl|Hg17|chr3 (139362075-139361807)
               

               
               482-742, gnl|mm7|chr9 (99227806-99227464)
               

               
               482-742, gnl|Mm7|chr9 (99227488-99227730)
               

               
               482-742, gnl|oryCun1|scaffold_173321 (63419-63086)
               

               
               482-742, gnl|panTro1|chr2 (141622893-141623281)
               

               
               482-742, gnl|rheMac2|chr2 (149664208-149663831)
               

               
               482-742, gnl|rn3|chr8 (104475280-104474976)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-260, gnl|bosTau2|chr1 (82330703-82330956)
               

               
               1-260, gnl|Hg17|chr3 (139362874-139362627)
               


               
               482-742, gnl|bosTau2|chr1 (82332357-82332621)
               

               
               482-742, gnl|canFam2|chr23 (37430150-37430510)
               

               
               482-742, gnl|echTel1|scaffold_291222 (12572-12313)
               

               
               482-742, gnl|hg17|chr3 (139361711-139362103)
               

               
               482-742, gnl|Hg17|chr3 (139362075-139361807)
               

               
               482-742, gnl|mm7|chr9 (99227806-99227464)
               

               
               482-742, gnl|Mm7|chr9 (99227488-99227730)
               

               
               482-742, gnl|oryCun1|scaffold_173321 (63419-63086)
               

               
               482-742, gnl|panTro1|chr2 (141622893-141623281)
               

               
               482-742, gnl|rheMac2|chr2 (149664208-149663831)
               

               
               482-742, gnl|rn3|chr8 (104475280-104474976)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sag (0.182715)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)

	1-260, gnl\|bosTau2\|chr1 (82330703-82330956)
	1-260, gnl\|Hg17\|chr3 (139362874-139362627)

	482-742, gnl\|bosTau2\|chr1 (82332357-82332621)
	482-742, gnl\|canFam2\|chr23 (37430150-37430510)
	482-742, gnl\|echTel1\|scaffold_291222 (12572-12313)
	482-742, gnl\|hg17\|chr3 (139361711-139362103)
	482-742, gnl\|Hg17\|chr3 (139362075-139361807)
	482-742, gnl\|mm7\|chr9 (99227806-99227464)
	482-742, gnl\|Mm7\|chr9 (99227488-99227730)
	482-742, gnl\|oryCun1\|scaffold_173321 (63419-63086)
	482-742, gnl\|panTro1\|chr2 (141622893-141623281)
	482-742, gnl\|rheMac2\|chr2 (149664208-149663831)
	482-742, gnl\|rn3\|chr8 (104475280-104474976)