Non-Coding RNA Search

Ss1.1-Pig4-TMW8038H21.3

Sequence:


               
               ACCACCCTTCCCCATCGAGGAATGATCTTATGGTTTGTTGAGTGGGGGAGATAATCCAGT
GTTACTTGTTTTAGAATGTCTAGCAAAGCCTTCGTGGTGGCTGCTCCCCGGGCCCCCACT
CTGAAGGGCAGCAGCCCTTTCCTTGCAGAGGTGCCGGCGGCAGCAGAGGGCTGTGCAGGA
CCGACTGGGGTTCCTCTTCAAAGCCAAATACACCCATGACTGAATTCCCGCAAGTCTGTA
GTTTAGCCCGAAAGTGAGATTTGACTCCTGAGTTTGCTAGTGTGAATTTTAAATGTAGTT
GTTGAAGGTATAAATTCATGTTTTGTAACTGTACAGGCAAGTGAGTTTTTACTTTTTAAG
AAGTTTTAAGGGAATAATTGTAAGTTTCTGTGCAGCAAAGTGGCTAATTACTCATTAAAT
ACAAGAAAAGAATGTAGTGTCTAAATCCAGATTTTTTCTTACCTCTGGTACATTTCAGAT
GACTTACCTAATATGTATTGAGGGGCTTTAACCCTGAGTTTTATCAACTTTTCTAGTTTT
ATTTTATTTTTATAAAATAATTGAAAAAACCAAAAATGAATTCAAACGTTCTATAGGTAG
ACCTTGTTCTTCTTAATTTTCCCCCACCCCCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACCCTTCCCCATCGAGGAATGATCTTATGGTTTGTTGAGTGGGGGAGATAATCCAGT
GTTACTTGTTTTAGAATGTCTAGCAAAGCCTTCGTGGTGGCTGCTCCCCGGGCCCCCACT
CTGAAGGGCAGCAGCCCTTTCCTTGCAGAGGTGCCGGCGGCAGCAGAGGGCTGTGCAGGA
CCGACTGGGGTTCCTCTTCAAAGCCAAATACACCCATGACTGAATTCCCGCAAGTCTGTA
GTTTAGCCCGAAAGTGAGATTTGACTCCTGAGTTTGCTAGTGTGAATTTTAAATGTAGTT
GTTGAAGGTATAAATTCATGTTTTGTAACTGTACAGGCAAGTGAGTTTTTACTTTTTAAG
AAGTTTTAAGGGAATAATTGTAAGTTTCTGTGCAGCAAAGTGGCTAATTACTCATTAAAT
ACAAGAAAAGAATGTAGTGTCTAAATCCAGATTTTTTCTTACCTCTGGTACATTTCAGAT
GACTTACCTAATATGTATTGAGGGGCTTTAACCCTGAGTTTTATCAACTTTTCTAGTTTT
ATTTTATTTTTATAAAATAATTGAAAAAACCAAAAATGAATTCAAACGTTCTATAGGTAG
ACCTTGTTCTTCTTAATTTTCCCCCACCCCCCCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               438-556, - strand, RNAz p=0.630391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-556, - strand, RNAz p=0.630391

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               145-626, gnl|bosTau2|chr14 (2881735-2881262)
               

               
               145-626, gnl|Hg17|chr8 (141603104-141602600)
               

               
               145-626, gnl|Mm7|chr15 (73179080-73178667)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-626, gnl|bosTau2|chr14 (2881735-2881262)
               

               
               145-626, gnl|Hg17|chr8 (141603104-141602600)
               

               
               145-626, gnl|Mm7|chr15 (73179080-73178667)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	145-626, gnl\|bosTau2\|chr14 (2881735-2881262)
	145-626, gnl\|Hg17\|chr8 (141603104-141602600)
	145-626, gnl\|Mm7\|chr15 (73179080-73178667)