Non-Coding RNA Search

Ss1.1-Pig4-TMW8038I02.3

Sequence:


               
               TCTGTGGGGCCGCCCAAGGAGCCGAAGCTGTCTTTCATCTTCCACCTCCAATTGCAAACA
ATAAAGGCCGGTCATACGATAGCAAAAAAAAAAAAACGTTCTTTTTCCCCCAAGGCTGGA
GAGATAGGCTGTATGCGTGGTTCCGCTAGACGGATTTTGCAAATCTTTCCTTGGACCTCA
GACCCTGCCCGAGAACGGGCGACATTTTCGCGGAAGTTTCTCTGGCCGACCTTGCCGGCA
CTTCCATAGATGGCAGCCCTGCGCCGAACCCTCCACGTGGCGAGCCTGGCGGCGGGAACG
CACCGCGCCTTGGCGGGCTCCTTGGCTGACAGCTGCCTGGCGGATCGCTGCCTCTGGGAT
AAGCTCCATGCCCAGCCCCGTCAGGGCAGCGTTCGCACCTTCGACTGGTTCTTTGGCTAC
GAGGAAGTCCAGGGGCTCCTACTGCCGCTTCTGCAGGAGGCACGGTCTGCCTGTCCACCG
CGGGTGTTGGACGTAGGCTGTGGGACCTCGAACTTGTGTACAGGCCTCTACACCAAATGC
CCACACCCCGTGGACGTGCTTGGGGTGGACTTCTCTCCTGTGGCCTTGGCCCACATGAAC
AGCCTCCTGGAGGGCGGCCAAGGCCAAACACCCCTGTCCCCTGGACATCTCGCCTCCCGC
CTCCATTTCCTGCAGGCTGATGCCCAGAACCTGGAGCCAGTAGCTCCCTCAGGCTCCTTC
CAGCTAGTACTGGACAAGGGCACCTGGGATGCTGTTGCCCGTGGTGGTCTGCCTGGGGCT
TACAAGCTGCTGTCAGAATGCCTGAGGGTTCTAAGCCCCCAGGGGACCCTGATTCAGTTC
TCAGATGAGGACCCTGATGTGCGGCTGCCCTGCCTGGAACAAGGGTCCAGAGGCTGGGCT
GTGACTGTGCAGGAGCTGGGCCCTTTCAGGGGCATCACCTACTTTGCTTACATGGTTCGA
GGCTGCAATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGGGGCCGCCCAAGGAGCCGAAGCTGTCTTTCATCTTCCACCTCCAATTGCAAACA
ATAAAGGCCGGTCATACGATAGCAAAAAAAAAAAAACGTTCTTTTTCCCCCAAGGCTGGA
GAGATAGGCTGTATGCGTGGTTCCGCTAGACGGATTTTGCAAATCTTTCCTTGGACCTCA
GACCCTGCCCGAGAACGGGCGACATTTTCGCGGAAGTTTCTCTGGCCGACCTTGCCGGCA
CTTCCATAGATGGCAGCCCTGCGCCGAACCCTCCACGTGGCGAGCCTGGCGGCGGGAACG
CACCGCGCCTTGGCGGGCTCCTTGGCTGACAGCTGCCTGGCGGATCGCTGCCTCTGGGAT
AAGCTCCATGCCCAGCCCCGTCAGGGCAGCGTTCGCACCTTCGACTGGTTCTTTGGCTAC
GAGGAAGTCCAGGGGCTCCTACTGCCGCTTCTGCAGGAGGCACGGTCTGCCTGTCCACCG
CGGGTGTTGGACGTAGGCTGTGGGACCTCGAACTTGTGTACAGGCCTCTACACCAAATGC
CCACACCCCGTGGACGTGCTTGGGGTGGACTTCTCTCCTGTGGCCTTGGCCCACATGAAC
AGCCTCCTGGAGGGCGGCCAAGGCCAAACACCCCTGTCCCCTGGACATCTCGCCTCCCGC
CTCCATTTCCTGCAGGCTGATGCCCAGAACCTGGAGCCAGTAGCTCCCTCAGGCTCCTTC
CAGCTAGTACTGGACAAGGGCACCTGGGATGCTGTTGCCCGTGGTGGTCTGCCTGGGGCT
TACAAGCTGCTGTCAGAATGCCTGAGGGTTCTAAGCCCCCAGGGGACCCTGATTCAGTTC
TCAGATGAGGACCCTGATGTGCGGCTGCCCTGCCTGGAACAAGGGTCCAGAGGCTGGGCT
GTGACTGTGCAGGAGCTGGGCCCTTTCAGGGGCATCACCTACTTTGCTTACATGGTTCGA
GGCTGCAATTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875034|ref|XP_589913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875034|ref|XP_589913.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               595-834, - strand, RNAz p=0.762019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               595-834, - strand, RNAz p=0.762019

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               316-972, gnl|bosTau2|chr29 (32101200-32101856)
               

               
               316-972, gnl|Hg17|chr11 (62190443-62191099)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               316-972, gnl|bosTau2|chr29 (32101200-32101856)
               

               
               316-972, gnl|Hg17|chr11 (62190443-62191099)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)

	316-972, gnl\|bosTau2\|chr29 (32101200-32101856)
	316-972, gnl\|Hg17\|chr11 (62190443-62191099)