Ss1.1-Pig4-TMW8038I06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAAGATAGCTGAAGAGCTACCCAAGGAGCCTCAGGGCATCATAGCGTGCTGTAACCCT GTGCCACCTCTTGTACGACAGCAGATCAATGAAATGCATCTTTTAATCCAGCAGGCTCGA GAGATGCCCCTGCTCAAGTCTGAAGTTGCAGCGGGAGTGAGGAAGAGCGGACCCCTGCCC AACCCTGAGAGATTGGAGAATGTTCTCTTTGGCCCTCACGACTGTTCCCACACCCCGTCC GACGGCTATCCTCTCACCCCGACCAGCGGGCCCGCGGCAGTGCAGGCCCGGGGCCTTCTC CCTGCCGGAGAGGAAGAGGAGGCCCTGCTGGACACCAGATGCCTCATCGCCACCGCTGTC ATCACATTGTTTAACGAACCTAGTGCTGAAGAAAATGGAAAGCGTCCATTAACAGTGGCA CAGAAAAAAGCCCAGAACATAATGGAGTCCTTTGAGAATCCATTTAGGATGTTCCTGCCT TCCTTGGAACACCGGGCTCACATCTCTCAGGCAGCCAAGTCTGATCCCTCCTCGAAAATC TTTGAAATCAGCAACCGTTGGAAGCTGGCAAGCCAAGTACAGGTGCAAAAAGAATCTAAA GAAATTGCCAAGAAGAAGGCAGCTGAGCAAACAGCTGCCCGGGACCAGGCCAGGGAGGAG TTCGGAGCCGCAGCAGCCCAGGCTGTGTCCGTGCGCCAGCAGGCTGCCCTGGAGACTGCT GCCAGGAAGAGAGAGCGAGTGACCAGTGACCCCAGGACGACAGAGCAGAAACAGGAGAAG AAGCGACTCAAAATTTCCAAGAAGCCAAAAGACCCAGACCCCTCAGAAAAAGAGTTTACC CCTTATGACTACAGCAAGTCGGATTTCAAGGCTTTTGCTGGAAACAGCAAATCCAAACCT TCTTTCCAGTTTGACCCAAACAAGCAGCCCCAGTCTGGCAAGAAATGCATTGCGGCCAAA AAAATTAAGCAGTCGCTGGGGAACAAAAGCATGTCCTTTCCGACTGGAAAGTCTGACAGA GGTTTCAGACACAACTGGCCGAAGAGATAGTGTTGGAAGAGACGCTTGGGATCCCCTAGT GGACGGGAAGCACCAGAGTGGTGCTGGTTTTGTACAGACTCATTTTTAAACCATTAAAAG TAATCCTTATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAAGATAGCTGAAGAGCTACCCAAGGAGCCTCAGGGCATCATAGCGTGCTGTAACCCT GTGCCACCTCTTGTACGACAGCAGATCAATGAAATGCATCTTTTAATCCAGCAGGCTCGA GAGATGCCCCTGCTCAAGTCTGAAGTTGCAGCGGGAGTGAGGAAGAGCGGACCCCTGCCC AACCCTGAGAGATTGGAGAATGTTCTCTTTGGCCCTCACGACTGTTCCCACACCCCGTCC GACGGCTATCCTCTCACCCCGACCAGCGGGCCCGCGGCAGTGCAGGCCCGGGGCCTTCTC CCTGCCGGAGAGGAAGAGGAGGCCCTGCTGGACACCAGATGCCTCATCGCCACCGCTGTC ATCACATTGTTTAACGAACCTAGTGCTGAAGAAAATGGAAAGCGTCCATTAACAGTGGCA CAGAAAAAAGCCCAGAACATAATGGAGTCCTTTGAGAATCCATTTAGGATGTTCCTGCCT TCCTTGGAACACCGGGCTCACATCTCTCAGGCAGCCAAGTCTGATCCCTCCTCGAAAATC TTTGAAATCAGCAACCGTTGGAAGCTGGCAAGCCAAGTACAGGTGCAAAAAGAATCTAAA GAAATTGCCAAGAAGAAGGCAGCTGAGCAAACAGCTGCCCGGGACCAGGCCAGGGAGGAG TTCGGAGCCGCAGCAGCCCAGGCTGTGTCCGTGCGCCAGCAGGCTGCCCTGGAGACTGCT GCCAGGAAGAGAGAGCGAGTGACCAGTGACCCCAGGACGACAGAGCAGAAACAGGAGAAG AAGCGACTCAAAATTTCCAAGAAGCCAAAAGACCCAGACCCCTCAGAAAAAGAGTTTACC CCTTATGACTACAGCAAGTCGGATTTCAAGGCTTTTGCTGGAAACAGCAAATCCAAACCT TCTTTCCAGTTTGACCCAAACAAGCAGCCCCAGTCTGGCAAGAAATGCATTGCGGCCAAA AAAATTAAGCAGTCGCTGGGGAACAAAAGCATGTCCTTTCCGACTGGAAAGTCTGACAGA GGTTTCAGACACAACTGGCCGAAGAGATAGTGTTGGAAGAGACGCTTGGGATCCCCTAGT GGACGGGAAGCACCAGAGTGGTGCTGGTTTTGTACAGACTCATTTTTAAACCATTAAAAG TAATCCTTATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 24-138, + strand, RNAz p=0.860938 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 24-138, + strand, RNAz p=0.860938 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 24-138, gnl|bosTau2|chr16 (22224451-22224565) | |
| 24-138, gnl|canFam2|chr2 (87836787-87836643) | |
| 24-138, gnl|danRer3|chr23 (15116419-15116557) | |
| 24-138, gnl|dasNov1|scaffold_5066 (529-674) | |
| 24-138, gnl|echTel1|scaffold_322126 (30291-30146) | |
| 24-138, gnl|fr1|chrUn (104916850-104916723) | |
| 24-138, gnl|galGal2|chr21 (3977148-3977281) | |
| 24-138, gnl|hg17|chr1 (11074018-11074163) | |
| 24-138, gnl|Hg17|chr1 (11074148-11074034) | |
| 24-138, gnl|loxAfr1|scaffold_84683 (296-441) | |
| 24-138, gnl|mm7|chr4 (147560046-147559914) | |
| 24-138, gnl|Mm7|chr4 (147559926-147560040) | |
| 24-138, gnl|monDom2|scaffold_175 (1136145-1136000) | |
| 24-138, gnl|oryCun1|scaffold_201999 (3573-3712) | |
| 24-138, gnl|panTro1|chr1 (11282147-11282292) | |
| 24-138, gnl|rheMac2|chr1 (14191490-14191635) | |
| 24-138, gnl|rn3|chr5 (165664128-165663988) | |
| 24-138, gnl|tetNig1|chr9 (2188881-2188749) | |
| 24-138, gnl|xenTro1|scaffold_522 (866423-866548) | |
| 709-881, gnl|bosTau2|chr16 (22232375-22232547) | |
| 709-881, gnl|Hg17|chr1 (11064053-11063881) | |
| 709-881, gnl|Mm7|chr4 (147569901-147570073) | |
| 1016-1159, gnl|bosTau2|chr16 (22234844-22234990) | |
| 1016-1159, gnl|canFam2|chr2 (87847489-87847354) | |
| 1016-1159, gnl|galGal2|chr21 (3970552-3970738) | |
| 1016-1159, gnl|hg17|chr1 (11060917-11061041) | |
| 1016-1159, gnl|Hg17|chr1 (11061075-11060941) | |
| 1016-1159, gnl|mm7|chr4 (147571958-147571858) | |
| 1016-1159, gnl|Mm7|chr4 (147571822-147571943) | |
| 1016-1159, gnl|monDom2|scaffold_175 (1157307-1157153) | |
| 1016-1159, gnl|oryCun1|scaffold_121792 (762-896) | |
| 1016-1159, gnl|panTro1|chr1 (11269327-11269451) | |
| 1016-1159, gnl|rheMac2|chr1 (14178480-14178608) | |
| 1016-1159, gnl|rn3|chr5 (165675750-165675645) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-138, gnl|bosTau2|chr16 (22224451-22224565) | |
| 24-138, gnl|canFam2|chr2 (87836787-87836643) | |
| 24-138, gnl|danRer3|chr23 (15116419-15116557) | |
| 24-138, gnl|dasNov1|scaffold_5066 (529-674) | |
| 24-138, gnl|echTel1|scaffold_322126 (30291-30146) | |
| 24-138, gnl|fr1|chrUn (104916850-104916723) | |
| 24-138, gnl|galGal2|chr21 (3977148-3977281) | |
| 24-138, gnl|hg17|chr1 (11074018-11074163) | |
| 24-138, gnl|Hg17|chr1 (11074148-11074034) | |
| 24-138, gnl|loxAfr1|scaffold_84683 (296-441) | |
| 24-138, gnl|mm7|chr4 (147560046-147559914) | |
| 24-138, gnl|Mm7|chr4 (147559926-147560040) | |
| 24-138, gnl|monDom2|scaffold_175 (1136145-1136000) | |
| 24-138, gnl|oryCun1|scaffold_201999 (3573-3712) | |
| 24-138, gnl|panTro1|chr1 (11282147-11282292) | |
| 24-138, gnl|rheMac2|chr1 (14191490-14191635) | |
| 24-138, gnl|rn3|chr5 (165664128-165663988) | |
| 24-138, gnl|tetNig1|chr9 (2188881-2188749) | |
| 24-138, gnl|xenTro1|scaffold_522 (866423-866548) | |
| 709-881, gnl|bosTau2|chr16 (22232375-22232547) | |
| 709-881, gnl|Hg17|chr1 (11064053-11063881) | |
| 709-881, gnl|Mm7|chr4 (147569901-147570073) | |
| 1016-1159, gnl|bosTau2|chr16 (22234844-22234990) | |
| 1016-1159, gnl|canFam2|chr2 (87847489-87847354) | |
| 1016-1159, gnl|galGal2|chr21 (3970552-3970738) | |
| 1016-1159, gnl|hg17|chr1 (11060917-11061041) | |
| 1016-1159, gnl|Hg17|chr1 (11061075-11060941) | |
| 1016-1159, gnl|mm7|chr4 (147571958-147571858) | |
| 1016-1159, gnl|Mm7|chr4 (147571822-147571943) | |
| 1016-1159, gnl|monDom2|scaffold_175 (1157307-1157153) | |
| 1016-1159, gnl|oryCun1|scaffold_121792 (762-896) | |
| 1016-1159, gnl|panTro1|chr1 (11269327-11269451) | |
| 1016-1159, gnl|rheMac2|chr1 (14178480-14178608) | |
| 1016-1159, gnl|rn3|chr5 (165675750-165675645) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| col (0.390016) | |
| fbs (0.350693) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fbs (0.350693) | |
| tes (0.207814) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) |