Ss1.1-Pig4-TMW8038I07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGGTGGCATGATGTCCATCTTCCTCATG GGCTGCTATGACCCGAGCAGCCAGAAGTGGTGCACAGTCACCAAGTGCGCAGGCGGCCAC GACGACGCGACGCTCGCCCGCCTGCAGACGGAGCTGGACATGGTGAAGATCAGCAAGGAT CCCAGCAAGATCCCCGGCTGGCTGAAAATCAATAAGATCTACTACCCTGACTTCATCGTC CCAGACCCAAAGAAAGCTGCCGTGTGGGAGATCACAGGGGCCGAATTCTCCAGATCCGAG GCTCACACAGCCGACGGGATCTCCATCCGATTCCCTCGCTGCACCCGGATCCGTGATGAT AAGGACTGGAAGTCCGCCACTAATCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAG GAGCGCGCGGCCTTCGCCCTAGTGGCCGGAGATGAGGGGAGCTCCACCACTGGGGGCAGC AGTGGAGAGAACGAGGGCCCCTCGGGGCCAGCAGTGTCCCACAAGGTCCCGAGGGCCTCG CCCAACGGCAAGAAGGCAGGAGGGAAGCTGAGTAGCTCCAACAGCAAAGGCGGCGGCAAG CTGGCTGCAAAGCCTTCCCCTGTGAAAGTGGGGGAGAAGCGGAAGGCTCCAGACGAGACC CCCTGCCAGGCAAAGGTGCTGCTGGACATCTTCACCGGGGTGCGGCTCTACCTGCCGCCC TCCACGCCAGACTTCAGCCGGCTCAGACGCTACTTTGTGGCATTCGATGGGGACCTGGTG CAGGAATTTGACGTGGCCTCGGCCACACATGTGCTGGGTAGCAGGGACCAGAACCCTGCA GCCCAGCAGGTGTCCCCGGAGTGGATTTGGGCATGTATCCGGAAACGGAGGCTGCTGGCT CCCTGCTAGGACTGCTGCCTCCCCTGCCCCCGCGCCGCTCCCCCTGGCCTGGGCTCCGGC TGGGCAGGCAGGCACCGGACCCAGCAGGGTGGGCATGGGCTTTCTTCTCTAGGCTGCGCC AAGTCTTCCCAAACCCACCAACCTCGCACAGTCTCTTCCCGACTGGAGCTGGTTGCTGCG GTACCACCAGTGAAGCTAGCCTCTCCTGCTGCTCTACGCAGATCTTCCTGATCTGGGTGC TGGTTTTGTCTTCTTTTTTTCCTTCTTTAAAAATAAGCTTTTTTAAAAAAACAAAAAACA AATGCACAGTCTTGGAGTATCTCTGTCCTCCCCCTTCACCCCCAATTCCCCTAGTGATGA AGGAGTGACGGGAAGGCAGGCTCTTGAAGCTCTGTCCCCAGAGCCAGGCCTGGTGGCAGT CTTCTCTCCCTAGCCTGTCCCTTCTACTTCCAGGCTCATTTTAAAGTTGTATTTAAAAGA CCTGTCCTCAGAAATGCTTCTATTTGGCAAAACTTGTATTCAGCCTGGCCCTTTTTGCCA GGAATGAAATCTCATTTGAAAGAAAACAAAGCGAATTTTATGTCTTAATTCTCTGTGTTC TCCTATTACAGGGTGTGGGTCCCAGTTTGAAGGGAGGGAACCAGGATCAGGTAGGAACAT GGGGCCTTTCTGAAGCAAAGGGAGGTCGTTGGGGCTACTCCTCTGGAGGACACGGGCCTC CAAATCAGAAACACGACTGCTCTTTAAAACCCACCTGAGGACAAGTCCACATCGCTGCTT GCAGAGAATGGGCCCTGTGCCACTCGAGGCTGATTTACTTGAATAAAGGAAAACAGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGGTGGCATGATGTCCATCTTCCTCATG GGCTGCTATGACCCGAGCAGCCAGAAGTGGTGCACAGTCACCAAGTGCGCAGGCGGCCAC GACGACGCGACGCTCGCCCGCCTGCAGACGGAGCTGGACATGGTGAAGATCAGCAAGGAT CCCAGCAAGATCCCCGGCTGGCTGAAAATCAATAAGATCTACTACCCTGACTTCATCGTC CCAGACCCAAAGAAAGCTGCCGTGTGGGAGATCACAGGGGCCGAATTCTCCAGATCCGAG GCTCACACAGCCGACGGGATCTCCATCCGATTCCCTCGCTGCACCCGGATCCGTGATGAT AAGGACTGGAAGTCCGCCACTAATCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAG GAGCGCGCGGCCTTCGCCCTAGTGGCCGGAGATGAGGGGAGCTCCACCACTGGGGGCAGC AGTGGAGAGAACGAGGGCCCCTCGGGGCCAGCAGTGTCCCACAAGGTCCCGAGGGCCTCG CCCAACGGCAAGAAGGCAGGAGGGAAGCTGAGTAGCTCCAACAGCAAAGGCGGCGGCAAG CTGGCTGCAAAGCCTTCCCCTGTGAAAGTGGGGGAGAAGCGGAAGGCTCCAGACGAGACC CCCTGCCAGGCAAAGGTGCTGCTGGACATCTTCACCGGGGTGCGGCTCTACCTGCCGCCC TCCACGCCAGACTTCAGCCGGCTCAGACGCTACTTTGTGGCATTCGATGGGGACCTGGTG CAGGAATTTGACGTGGCCTCGGCCACACATGTGCTGGGTAGCAGGGACCAGAACCCTGCA GCCCAGCAGGTGTCCCCGGAGTGGATTTGGGCATGTATCCGGAAACGGAGGCTGCTGGCT CCCTGCTAGGACTGCTGCCTCCCCTGCCCCCGCGCCGCTCCCCCTGGCCTGGGCTCCGGC TGGGCAGGCAGGCACCGGACCCAGCAGGGTGGGCATGGGCTTTCTTCTCTAGGCTGCGCC AAGTCTTCCCAAACCCACCAACCTCGCACAGTCTCTTCCCGACTGGAGCTGGTTGCTGCG GTACCACCAGTGAAGCTAGCCTCTCCTGCTGCTCTACGCAGATCTTCCTGATCTGGGTGC TGGTTTTGTCTTCTTTTTTTCCTTCTTTAAAAATAAGCTTTTTTAAAAAAACAAAAAACA AATGCACAGTCTTGGAGTATCTCTGTCCTCCCCCTTCACCCCCAATTCCCCTAGTGATGA AGGAGTGACGGGAAGGCAGGCTCTTGAAGCTCTGTCCCCAGAGCCAGGCCTGGTGGCAGT CTTCTCTCCCTAGCCTGTCCCTTCTACTTCCAGGCTCATTTTAAAGTTGTATTTAAAAGA CCTGTCCTCAGAAATGCTTCTATTTGGCAAAACTTGTATTCAGCCTGGCCCTTTTTGCCA GGAATGAAATCTCATTTGAAAGAAAACAAAGCGAATTTTATGTCTTAATTCTCTGTGTTC TCCTATTACAGGGTGTGGGTCCCAGTTTGAAGGGAGGGAACCAGGATCAGGTAGGAACAT GGGGCCTTTCTGAAGCAAAGGGAGGTCGTTGGGGCTACTCCTCTGGAGGACACGGGCCTC CAAATCAGAAACACGACTGCTCTTTAAAACCCACCTGAGGACAAGTCCACATCGCTGCTT GCAGAGAATGGGCCCTGTGCCACTCGAGGCTGATTTACTTGAATAAAGGAAAACAGTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 753-989, + strand, RNAz p=0.996362 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 753-989, + strand, RNAz p=0.996362 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK125853, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 30-178, gnl|bosTau2|chr19 (8895508-8895656) | |
| 30-178, gnl|Hg17|chr17 (30350436-30350582) | |
| 30-178, gnl|Mm7|chr11 (82878879-82879024) | |
| 251-400, gnl|bosTau2|chr19 (8896705-8896854) | |
| 251-400, gnl|canFam2|chr9 (41670904-41670735) | |
| 251-400, gnl|danRer3|chrNA (48772148-48771984) | |
| 251-400, gnl|dasNov1|scaffold_3522 (39705-39533) | |
| 251-400, gnl|echTel1|scaffold_325207 (2769-2608) | |
| 251-400, gnl|fr1|chrUn (7960634-7960801) | |
| 251-400, gnl|galGal2|chr19 (4231070-4230904) | |
| 251-400, gnl|hg17|chr17 (30352375-30352547) | |
| 251-400, gnl|Hg17|chr17 (30352387-30352536) | |
| 251-400, gnl|loxAfr1|scaffold_32726 (9440-9612) | |
| 251-400, gnl|mm7|chr11 (82879817-82879989) | |
| 251-400, gnl|Mm7|chr11 (82879829-82879978) | |
| 251-400, gnl|monDom2|scaffold_44 (7669554-7669392) | |
| 251-400, gnl|oryCun1|scaffold_190408 (40843-41014) | |
| 251-400, gnl|panTro1|chr19 (33873541-33873713) | |
| 251-400, gnl|rheMac2|chr16 (30298817-30298989) | |
| 251-400, gnl|rn3|chr10 (71031505-71031677) | |
| 251-400, gnl|tetNig1|chrUn_random (29215601-29215441) | |
| 251-400, gnl|xenTro1|scaffold_413 (723089-722925) | |
| 674-1292, gnl|bosTau2|chr19 (8899177-8899776) | |
| 674-1292, gnl|Hg17|chr17 (30355403-30356048) | |
| 674-1292, gnl|Mm7|chr11 (82882854-82883538) | |
| 1339-1738, gnl|bosTau2|chr19 (8899777-8900173) | |
| 1339-1738, gnl|Hg17|chr17 (30356049-30357292) | |
| 1339-1738, gnl|Mm7|chr11 (82883539-82883890) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-178, gnl|bosTau2|chr19 (8895508-8895656) | |
| 30-178, gnl|Hg17|chr17 (30350436-30350582) | |
| 30-178, gnl|Mm7|chr11 (82878879-82879024) | |
| 251-400, gnl|bosTau2|chr19 (8896705-8896854) | |
| 251-400, gnl|canFam2|chr9 (41670904-41670735) | |
| 251-400, gnl|danRer3|chrNA (48772148-48771984) | |
| 251-400, gnl|dasNov1|scaffold_3522 (39705-39533) | |
| 251-400, gnl|echTel1|scaffold_325207 (2769-2608) | |
| 251-400, gnl|fr1|chrUn (7960634-7960801) | |
| 251-400, gnl|galGal2|chr19 (4231070-4230904) | |
| 251-400, gnl|hg17|chr17 (30352375-30352547) | |
| 251-400, gnl|Hg17|chr17 (30352387-30352536) | |
| 251-400, gnl|loxAfr1|scaffold_32726 (9440-9612) | |
| 251-400, gnl|mm7|chr11 (82879817-82879989) | |
| 251-400, gnl|Mm7|chr11 (82879829-82879978) | |
| 251-400, gnl|monDom2|scaffold_44 (7669554-7669392) | |
| 251-400, gnl|oryCun1|scaffold_190408 (40843-41014) | |
| 251-400, gnl|panTro1|chr19 (33873541-33873713) | |
| 251-400, gnl|rheMac2|chr16 (30298817-30298989) | |
| 251-400, gnl|rn3|chr10 (71031505-71031677) | |
| 251-400, gnl|tetNig1|chrUn_random (29215601-29215441) | |
| 251-400, gnl|xenTro1|scaffold_413 (723089-722925) | |
| 674-1292, gnl|bosTau2|chr19 (8899177-8899776) | |
| 674-1292, gnl|Hg17|chr17 (30355403-30356048) | |
| 674-1292, gnl|Mm7|chr11 (82882854-82883538) | |
| 1339-1738, gnl|bosTau2|chr19 (8899777-8900173) | |
| 1339-1738, gnl|Hg17|chr17 (30356049-30357292) | |
| 1339-1738, gnl|Mm7|chr11 (82883539-82883890) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| vin (0.332557) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |