Non-Coding RNA Search

Ss1.1-Pig4-TMW8038I11.5

Sequence:


               
               AACCTCTTCCCATTTTTTTTTGTTCTTTTTTGTGGTAAAAATTATAATGATTCTTCATTT
TACTTAATATCACATACTTTATTCATTATTTGAATGTCAGTGGTAATGGAGTAAATGCCA
TTGTTAGTTTATTTCTTTTCTTCCTACTAGAGCCTGAAGAGTCATTCCTTGTTAAGAAAG
TGTACAGTGTAACGTATTTACTACATAGTGTTACATGGATATATATTTTTAAAAAGGAAA
AAAATTTGAAAGTATCACTTCTTACCACCAGCATCACTGTTAACAATAATTGATCAAATA
CGCTTGAGGAAACCCAATCAATGTTTAGTGAAGGATTATTATCTCTTTACAAAGATTCAG
TGATTAGTAACATATATATGGTTAAAAAAAAATGTCAGCTCTGGTAATTGCACACATCTG
ACAACAGGTGTTTGAGATAGTCTAAGCATGAATTATCCCAGGTGCATGAGGATATTTTAG
TCACAGGTTGAGAGACAAGTTTCATGGAAGCTGTTTATCTTATACCAGGGCCTGGGCTTG
GACCTTGGTATCGCCACAGTTTTCTTTGGCTGATGACTAAGCTGGTACTGTTAAGAATGA
TCCATCTCATTAATATCCAGGAAGAAATAGTTTCATGCAGTTGTCATCTGTTAGAGACAT
TCATTTTATTTTGAAATAAATGTTAACTGTGGGAGTTAATCTTGAGTTTCTGTTGCCCAC
AAATCTTTATCTAGAAACCCCCACCACACACACACACACACACACACACACTTTGTTGTT
TTTGGAGCAAGATTCCAGATACGTTTTCTTAAATGGTGATTTTACTATTCTTGAGGGTGG
TTTTTGTTAATGATATATTTAAAGATGGACTCTCATATTAGCTTTCATTCTGTTGACCTT
GGCAAAATGTACAGTAGATTTTCATGATCATTGCCCATCTTTTCTCATTGAAATGTATCT
TTTGTGTTTTTAAATGCATTTATTTTATAGTTGTGACTTTATTATTGACTTAAAATAAAG
AAGTAGAAATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCTCTTCCCATTTTTTTTTGTTCTTTTTTGTGGTAAAAATTATAATGATTCTTCATTT
TACTTAATATCACATACTTTATTCATTATTTGAATGTCAGTGGTAATGGAGTAAATGCCA
TTGTTAGTTTATTTCTTTTCTTCCTACTAGAGCCTGAAGAGTCATTCCTTGTTAAGAAAG
TGTACAGTGTAACGTATTTACTACATAGTGTTACATGGATATATATTTTTAAAAAGGAAA
AAAATTTGAAAGTATCACTTCTTACCACCAGCATCACTGTTAACAATAATTGATCAAATA
CGCTTGAGGAAACCCAATCAATGTTTAGTGAAGGATTATTATCTCTTTACAAAGATTCAG
TGATTAGTAACATATATATGGTTAAAAAAAAATGTCAGCTCTGGTAATTGCACACATCTG
ACAACAGGTGTTTGAGATAGTCTAAGCATGAATTATCCCAGGTGCATGAGGATATTTTAG
TCACAGGTTGAGAGACAAGTTTCATGGAAGCTGTTTATCTTATACCAGGGCCTGGGCTTG
GACCTTGGTATCGCCACAGTTTTCTTTGGCTGATGACTAAGCTGGTACTGTTAAGAATGA
TCCATCTCATTAATATCCAGGAAGAAATAGTTTCATGCAGTTGTCATCTGTTAGAGACAT
TCATTTTATTTTGAAATAAATGTTAACTGTGGGAGTTAATCTTGAGTTTCTGTTGCCCAC
AAATCTTTATCTAGAAACCCCCACCACACACACACACACACACACACACACTTTGTTGTT
TTTGGAGCAAGATTCCAGATACGTTTTCTTAAATGGTGATTTTACTATTCTTGAGGGTGG
TTTTTGTTAATGATATATTTAAAGATGGACTCTCATATTAGCTTTCATTCTGTTGACCTT
GGCAAAATGTACAGTAGATTTTCATGATCATTGCCCATCTTTTCTCATTGAAATGTATCT
TTTGTGTTTTTAAATGCATTTATTTTATAGTTGTGACTTTATTATTGACTTAAAATAAAG
AAGTAGAAATAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               19-450, gnl|bosTau2|chr6 (26815465-26815025)
               

               
               19-450, gnl|Hg17|chr8 (52894302-52893887)
               


               
               799-1043, gnl|bosTau2|chr6 (26814392-26814153)
               

               
               799-1043, gnl|Hg17|chr8 (52893507-52893278)
               

               
               799-1043, gnl|Mm7|chr1 (7180528-7180751)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-450, gnl|bosTau2|chr6 (26815465-26815025)
               

               
               19-450, gnl|Hg17|chr8 (52894302-52893887)
               


               
               799-1043, gnl|bosTau2|chr6 (26814392-26814153)
               

               
               799-1043, gnl|Hg17|chr8 (52893507-52893278)
               

               
               799-1043, gnl|Mm7|chr1 (7180528-7180751)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               lyg (0.665513)
               

               
               sme (0.610874)
               

               
               fat (0.442282)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.665513)
               

               
               sme (0.610874)
               

               
               fat (0.442282)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               bfe (0.299715)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	19-450, gnl\|bosTau2\|chr6 (26815465-26815025)
	19-450, gnl\|Hg17\|chr8 (52894302-52893887)

	799-1043, gnl\|bosTau2\|chr6 (26814392-26814153)
	799-1043, gnl\|Hg17\|chr8 (52893507-52893278)
	799-1043, gnl\|Mm7\|chr1 (7180528-7180751)

	lyg (0.665513)
	sme (0.610874)
	fat (0.442282)
	rec (0.346141)
	fco (0.314416)
	bfe (0.299715)
	kid (0.259471)
	tra (0.246184)
	aor (0.195274)
	cmu (0.186393)
	mgm (0.180343)
	mcp (0.170648)
	fhi (0.169578)
	tbr (0.154178)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	nca (0.136874)
	pla (0.133672)
	ret (0.128733)
	ldo (0.0970026)