Non-Coding RNA Search

Ss1.1-Pig4-TMW8038I12.3

Sequence:


               
               CCAGCCCCAGGGGGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGC
ACGTCCAGCAGCTGCTCCTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACA
GTCGCTTCCCGGTGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCA
ACATAGAAAATGCCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGG
CCATCTCAGAAGGATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATG
ATTTTATTTCGCCATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGG
CCGTCTACATGACCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTAC
CGGCCTCCTTTGGGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGG
GAGACCCTGGGTTCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGA
CGTTCTCACGGACCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGA
GATGACTTTTCCAAATTACATTCGAGCATCAGATTTCTACTGAAGTGATAACGGGTTTTA
CGCCAGCCTGGGTCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCA
CCTCGTCCCTCCCTTTCCTTCCTGTGGAGCCTCTTTAAAATTCCAACCAAGTCTGTGCTG
CTTCCCCATCAGCCTCCACAAGGTTCTAGCCTGCTTTGAGCGACTTTTCTAATTATAAAC
ATCATGGAGCGTCCTGATTCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCCCCAGGGGGACCAACATGGCCCAAGAGCGTCCCAGTCCCGCCTTGGAGCCCGAGC
ACGTCCAGCAGCTGCTCCTCTCCTGCCGGGAGGCCAAGAAGTCCGCCTACTGCCCCTACA
GTCGCTTCCCGGTGGGGGCGGCCCTCCTCACCGGGGACGGGAGGATTTTCTCCGGGTGCA
ACATAGAAAATGCCTGCTACCCGCTGGGCGTCTGTGCTGAACGGACCGCCATCCAGAAGG
CCATCTCAGAAGGATACAAAGAGTTCAGGGCAATTGCCATCGCCAGTGATCTGCAAGATG
ATTTTATTTCGCCATGCGGGGCCTGCAGGCAAGTCATGAGAGAGTTTGGCACCAACTGGG
CCGTCTACATGACCAAGCCGGATGGCACATACGTTGTCAGGACCATCCAGGAGCTGCTAC
CGGCCTCCTTTGGGCCCGAGGACCTGCAGAAGATCCAGTGAAAGGTGGAGAACATCCTGG
GAGACCCTGGGTTCCCACATGTTGCTTAAGGGGACGGCCACCTGGAGAATTTCATGAGGA
CGTTCTCACGGACCTGGGGACTCCTGCCAAATGGCCCCCAAGTCCACAGGCACCAGGCGA
GATGACTTTTCCAAATTACATTCGAGCATCAGATTTCTACTGAAGTGATAACGGGTTTTA
CGCCAGCCTGGGTCAGAGCCCCACGTTGCAACTGCCTTGTCCTCCCTGGGGCTCAGAGCA
CCTCGTCCCTCCCTTTCCTTCCTGTGGAGCCTCTTTAAAATTCCAACCAAGTCTGTGCTG
CTTCCCCATCAGCCTCCACAAGGTTCTAGCCTGCTTTGAGCGACTTTTCTAATTATAAAC
ATCATGGAGCGTCCTGATTCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34872207|ref|XP_342956.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34872207|ref|XP_342956.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-175, gnl|bosTau2|chr17 (41963871-41964044)
               

               
               1-175, gnl|Hg17|chr1 (20660908-20661083)
               

               
               1-175, gnl|Mm7|chr4 (137746414-137746230)
               


               
               343-844, gnl|bosTau2|chr17 (41984116-41984612)
               

               
               343-844, gnl|Hg17|chr1 (20690249-20690688)
               

               
               343-844, gnl|Mm7|chr4 (137717443-137716992)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr17 (41963871-41964044)
               

               
               1-175, gnl|Hg17|chr1 (20660908-20661083)
               

               
               1-175, gnl|Mm7|chr4 (137746414-137746230)
               


               
               343-844, gnl|bosTau2|chr17 (41984116-41984612)
               

               
               343-844, gnl|Hg17|chr1 (20690249-20690688)
               

               
               343-844, gnl|Mm7|chr4 (137717443-137716992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cag (0.151194)

	1-175, gnl\|bosTau2\|chr17 (41963871-41964044)
	1-175, gnl\|Hg17\|chr1 (20660908-20661083)
	1-175, gnl\|Mm7\|chr4 (137746414-137746230)

	343-844, gnl\|bosTau2\|chr17 (41984116-41984612)
	343-844, gnl\|Hg17\|chr1 (20690249-20690688)
	343-844, gnl\|Mm7\|chr4 (137717443-137716992)