Ss1.1-Pig4-TMW8038I21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGAGCTCGGAGCTCGGAGCTCGCAGCTCGCTTCGCCCTGCGCCTCTGTCGCCGCCG CCGCTGCCACCGCCACCCGCACACCCTTGGCGCGTCCACGCACCGCTCCGCTCCTTGCAG CCGGCACAGAGTGCGCTTATCGCTCGTTCAGGGCAGAGTGTCCCCGTTGCAGCCCCTCGG CGATGGCCACCAAGATCGACAAAGAGGCTTGCCGGACGGCGTATAACCTGGTGCGCGACG ACAGCTCGGCCGTCATCTGGGTGACTTTTAAATACGACGGCTCCACCATCGTCCCCGGCG AGCAGGGAGCGGAATATCAGGACTTCATCCAACAATGCACAGATGACGTCCGATTGTTTG CCTTCGTGCGTTTCACCACCGGGGATGCCATGAGCAAGAGGTCCAAGTTTGCCCTCATCA CCTGGATTGGCGAGAACGTCAGCGGGCTGCAGCGCGCCAAGACGGGCACCGACAAGACCC TGGTGAAGGAAGTGGTGCAGAATTTCGCCAAAGAGTTTGTGATCAGTGATCGGAAGGAGC TGGAGGAAGATTTTATCAAGAGCGAGCTCAAGAAGGCCGGGGGTGCCAATTATGACGCCC AGACGGAGTAACCCCCGCACCCCGCGCCTTGCCAAAGTCATCTGCCTGCTCCCCGGGGGA GGGGACCGCGGCCTCAGCTACCAGCCCATCAGCCCACCAGGGAGAGGAGACGCGATGAGA GGCAACGCCCGCCACCCCGTCCGCAACCCAGCTCCCCTCCCCGCTTCCCCTTGTGCACCT GCTGTGTCCCGTCCCATGAAGCTCATGGAACATCTTTCTTTGCTTTTTTTTCTTTTCTCC CCCTGACCCCTTTCTTGTTCTAAACAAAAATCATTTGGATGCCAAGGTCACGCACATCAC CAGATCGGAGGTGCCTCCCGCGGTGACCCTCTCCTGGCATTTCTTAACGCACAGGCAGCC TGCCCGGCCTGACCCATCAACCTCGCGTCGCTTCTGGCGCCTGGGCCAGTGTCGCTTTCT TGTTTTCTTTTTTTTGGCGCCCGCCTGCTTCCCACGGAGGAGGCAGCCACGTGGGGAGCC CGTCCTCATCGCGCCCTTGTCGCACCCCGCTGGCCAGGCTCACACCTCCAGGAGTCCCTC CGGAGGCCCCCCCCACCCCCCACCTCCATTCCAAGTTGCCTAAGCTCCATGTCCATCAGA GACGGTGCTCGGTGGAGAGATGGGCAGCCCTGACTCAGAACGAAGGAGGAGAGAGGAAAA TCTGCCACCCGTCAGAAGCGGCCCGTTCCCCAGCCTTGGGATGGCGCTCTCGGGATGGCG GGGGGGTGGGGGCAGAGGTCTGAGTCCAGATTCGACGGGAGGTGCTCAGGGCTCACATCC TCGGGCTCCCCAAGTGACGAGGACATTAGGGGTGCAGAATGGACATTTAGGTCAAAGCGG TCCTCTGCACGACAGCACGGACAGCAGGGGACAGAGGCTCCCTGCTCCGTCACGGTCACC ACAGCTGTGTGTGCAGCCCCCCCCCCCGTGGGGGGGGACCAGAAAGTCTATGGTTTTAAT CCTCGGTGGCACCTCACACAAAAAGGATTTTTTTTTTTCAAAGAAAGATGAGGTTGGCTT GGTTCTTCATGCGCATGTTAGGTAGGGCTCTTTTTCTCTTTTCCTTGCTCGTTTCGTCGG GGGACGTCTGTGCTGTGCTGGGGTGGTGAAGGCATCTGCACTCAAAACGGTTTACAGAAA TAAATTTTTGTTTTGTTTTGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGAGCTCGGAGCTCGGAGCTCGCAGCTCGCTTCGCCCTGCGCCTCTGTCGCCGCCG CCGCTGCCACCGCCACCCGCACACCCTTGGCGCGTCCACGCACCGCTCCGCTCCTTGCAG CCGGCACAGAGTGCGCTTATCGCTCGTTCAGGGCAGAGTGTCCCCGTTGCAGCCCCTCGG CGATGGCCACCAAGATCGACAAAGAGGCTTGCCGGACGGCGTATAACCTGGTGCGCGACG ACAGCTCGGCCGTCATCTGGGTGACTTTTAAATACGACGGCTCCACCATCGTCCCCGGCG AGCAGGGAGCGGAATATCAGGACTTCATCCAACAATGCACAGATGACGTCCGATTGTTTG CCTTCGTGCGTTTCACCACCGGGGATGCCATGAGCAAGAGGTCCAAGTTTGCCCTCATCA CCTGGATTGGCGAGAACGTCAGCGGGCTGCAGCGCGCCAAGACGGGCACCGACAAGACCC TGGTGAAGGAAGTGGTGCAGAATTTCGCCAAAGAGTTTGTGATCAGTGATCGGAAGGAGC TGGAGGAAGATTTTATCAAGAGCGAGCTCAAGAAGGCCGGGGGTGCCAATTATGACGCCC AGACGGAGTAACCCCCGCACCCCGCGCCTTGCCAAAGTCATCTGCCTGCTCCCCGGGGGA GGGGACCGCGGCCTCAGCTACCAGCCCATCAGCCCACCAGGGAGAGGAGACGCGATGAGA GGCAACGCCCGCCACCCCGTCCGCAACCCAGCTCCCCTCCCCGCTTCCCCTTGTGCACCT GCTGTGTCCCGTCCCATGAAGCTCATGGAACATCTTTCTTTGCTTTTTTTTCTTTTCTCC CCCTGACCCCTTTCTTGTTCTAAACAAAAATCATTTGGATGCCAAGGTCACGCACATCAC CAGATCGGAGGTGCCTCCCGCGGTGACCCTCTCCTGGCATTTCTTAACGCACAGGCAGCC TGCCCGGCCTGACCCATCAACCTCGCGTCGCTTCTGGCGCCTGGGCCAGTGTCGCTTTCT TGTTTTCTTTTTTTTGGCGCCCGCCTGCTTCCCACGGAGGAGGCAGCCACGTGGGGAGCC CGTCCTCATCGCGCCCTTGTCGCACCCCGCTGGCCAGGCTCACACCTCCAGGAGTCCCTC CGGAGGCCCCCCCCACCCCCCACCTCCATTCCAAGTTGCCTAAGCTCCATGTCCATCAGA GACGGTGCTCGGTGGAGAGATGGGCAGCCCTGACTCAGAACGAAGGAGGAGAGAGGAAAA TCTGCCACCCGTCAGAAGCGGCCCGTTCCCCAGCCTTGGGATGGCGCTCTCGGGATGGCG GGGGGGTGGGGGCAGAGGTCTGAGTCCAGATTCGACGGGAGGTGCTCAGGGCTCACATCC TCGGGCTCCCCAAGTGACGAGGACATTAGGGGTGCAGAATGGACATTTAGGTCAAAGCGG TCCTCTGCACGACAGCACGGACAGCAGGGGACAGAGGCTCCCTGCTCCGTCACGGTCACC ACAGCTGTGTGTGCAGCCCCCCCCCCCGTGGGGGGGGACCAGAAAGTCTATGGTTTTAAT CCTCGGTGGCACCTCACACAAAAAGGATTTTTTTTTTTCAAAGAAAGATGAGGTTGGCTT GGTTCTTCATGCGCATGTTAGGTAGGGCTCTTTTTCTCTTTTCCTTGCTCGTTTCGTCGG GGGACGTCTGTGCTGTGCTGGGGTGGTGAAGGCATCTGCACTCAAAACGGTTTACAGAAA TAAATTTTTGTTTTGTTTTGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 496-1266, gnl|bosTau2|chr18 (12109881-12110655) | |
| 496-1266, gnl|Hg17|chr16 (83158067-83157280) | |
| 1535-1759, gnl|bosTau2|chr18 (12110918-12111146) | |
| 1535-1759, gnl|canFam2|chr5 (70909778-70909963) | |
| 1535-1759, gnl|canFam2|chr5 (70909993-70909584) | |
| 1535-1759, gnl|canFam2|chr5 (70909938-70909574) | |
| 1535-1759, gnl|dasNov1|scaffold_18248 (19345-18948) | |
| 1535-1759, gnl|dasNov1|scaffold_90201 (265-77) | |
| 1535-1759, gnl|dasNov1|scaffold_90201 (97-456) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10738-10935) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10976-10566) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10925-10557) | |
| 1535-1759, gnl|hg17|chr15 (76903543-76903930) | |
| 1535-1759, gnl|hg17|chr16 (83156669-83157087) | |
| 1535-1759, gnl|Hg17|chr16 (83156950-83156711) | |
| 1535-1759, gnl|hg17|chr17 (16699976-16700170) | |
| 1535-1759, gnl|mm7|chr8 (118444400-118444723) | |
| 1535-1759, gnl|mm7|chr8 (118444433-118444753) | |
| 1535-1759, gnl|monDom2|scaffold_23 (15888102-15888269) | |
| 1535-1759, gnl|monDom2|scaffold_23 (15888293-15887937) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4057-4224) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4256-3886) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4210-3876) | |
| 1535-1759, gnl|panTro1|chr16 (77610365-77610752) | |
| 1535-1759, gnl|panTro1|chr18 (78052096-78052514) | |
| 1535-1759, gnl|panTro1|chr19 (17065167-17065362) | |
| 1535-1759, gnl|rheMac2|chr16 (18337016-18336832) | |
| 1535-1759, gnl|rheMac2|chr20 (82694466-82694879) | |
| 1535-1759, gnl|rheMac2|chr7 (57948062-57948448) | |
| 1535-1759, gnl|rn3|chr19 (50101685-50101503) | |
| 1535-1759, gnl|rn3|chr19 (50101509-50101809) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 496-1266, gnl|bosTau2|chr18 (12109881-12110655) | |
| 496-1266, gnl|Hg17|chr16 (83158067-83157280) | |
| 1535-1759, gnl|bosTau2|chr18 (12110918-12111146) | |
| 1535-1759, gnl|canFam2|chr5 (70909778-70909963) | |
| 1535-1759, gnl|canFam2|chr5 (70909993-70909584) | |
| 1535-1759, gnl|canFam2|chr5 (70909938-70909574) | |
| 1535-1759, gnl|dasNov1|scaffold_18248 (19345-18948) | |
| 1535-1759, gnl|dasNov1|scaffold_90201 (265-77) | |
| 1535-1759, gnl|dasNov1|scaffold_90201 (97-456) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10738-10935) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10976-10566) | |
| 1535-1759, gnl|echTel1|scaffold_276228 (10925-10557) | |
| 1535-1759, gnl|hg17|chr15 (76903543-76903930) | |
| 1535-1759, gnl|hg17|chr16 (83156669-83157087) | |
| 1535-1759, gnl|Hg17|chr16 (83156950-83156711) | |
| 1535-1759, gnl|hg17|chr17 (16699976-16700170) | |
| 1535-1759, gnl|mm7|chr8 (118444400-118444723) | |
| 1535-1759, gnl|mm7|chr8 (118444433-118444753) | |
| 1535-1759, gnl|monDom2|scaffold_23 (15888102-15888269) | |
| 1535-1759, gnl|monDom2|scaffold_23 (15888293-15887937) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4057-4224) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4256-3886) | |
| 1535-1759, gnl|oryCun1|scaffold_124699 (4210-3876) | |
| 1535-1759, gnl|panTro1|chr16 (77610365-77610752) | |
| 1535-1759, gnl|panTro1|chr18 (78052096-78052514) | |
| 1535-1759, gnl|panTro1|chr19 (17065167-17065362) | |
| 1535-1759, gnl|rheMac2|chr16 (18337016-18336832) | |
| 1535-1759, gnl|rheMac2|chr20 (82694466-82694879) | |
| 1535-1759, gnl|rheMac2|chr7 (57948062-57948448) | |
| 1535-1759, gnl|rn3|chr19 (50101685-50101503) | |
| 1535-1759, gnl|rn3|chr19 (50101509-50101809) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ebs (0.473205) | |
| elu (0.385356) | |
| nje (0.33184) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| eru (0.240096) | |
| clu (0.239292) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| elu (0.385356) | |
| nje (0.33184) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| eru (0.240096) | |
| clu (0.239292) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| nbm (0.0993246) |