Non-Coding RNA Search

Ss1.1-Pig4-TMW8038I22.3.5

Sequence:


               
               AGTCTTATGTGGAACTGGGGCTGAATGAAGATGATGCATTTGCGAAGGGCCCTACGCTAA
CAGTGTACAAGGAATCCTTTGAATCTCAGTTTTTGGCTGACACAGAGAGATTTTATACCA
GAGAGAGTACCGAATTCTTGCAGCAGAACCCAGTTACTGAATATATGAAAAAGGCAGAGG
CTCGTCTGCTGGAGGAACAGCGGAGAGTCCAGGTCTACCTTCATGAAAGCACCCAGGACG
AGCTAGCAAGGAAGTGTGAGCAGGTGCTTATTGAGAAACACTTGGAAATCTTCCACACAG
AATTTCAGAATTTACTGGATGCTGACAAAAATGAAGATTTGGGTCGCATGTATAATCTTG
TATCTAGAATCCAGGATGGCCTGGGAGAATTGAAAAAACTCCTGGAGACACACATTCATA
ATCAGGGTCTTGCAGCAATTGAAAAATGTGGAGAAGCTGCTTTGAATGACCCCAAAATGT
ATGTACAGACAGTGTTGGATGTTCATAAAAAGTACAACGCCCTGGTGATGTCCGCGTTCA
ACAATGATGCTGGCTTTGTGGCTGCGCTGGACAAGGCTTGCGGGCGCTTCATAAACAACA
ACGCAGTTACCAAAATGGCTCAGTCTTCCAGCAAATCCCCTGAGTTGCTGGCTCGATACT
GTGACTCCTTGTTGAAGAAGAGTTCCAAGAACCCAGAAGAAGCAGAGCTAGAAGACACAC
TCAATCAAGTGATGGTGGTCTTCAAGTACATAGAGGACAAAGATGTGTTCCAGAAGTTCT
ATGCAAAGATGCTGGCCAAGAGGCTTGTCCATCAGAATAGCGCCAGCGATGATGCTGAAG
CAAGCATGATCTCTAAGTTAAAGCAAGCTTGTGGTTTTGAGTATACCTCTAAACTTCAGC
GGATGTTTCAAGATATTGGTGTAAGCAAAGATTTGAACGAGCAGTTCAAAAAGCACCTGA
CGAATTCAGAACCACTGGACTTGGATTTCAGTATTCAAGTTCTCAGCTCCGGATCGTGGC
CCTTTCAGCAATCCTGTACGTTTGCCTTGCCGTCAGAGTTGGAACGGAGTTATCAGCGAT
TCACAGCTTTTTATGCTAGCCGTCACAGTGGGAGAAAATTGACATGGTTGTATCAGCTGT
CTAAAGGAGAGTTAGTAACAAACTGCTTCAAAAACAGATACACTTTGCAGGCATCTACGT
TCCAGATGGCCATCCTGCTCCAGTACAACACAGAAGACGCTTACGCTGTGCAGCAGCTGA
CCGACAGCACCCAGATCAAAATGGACATTTTGGCACAAGTCCTACAGATTTTATTGAAGT
CAAAGTTATTGGTCTTGGAAGATGAAAATGCAAATGTTGATGAGGTGGAATTGAAGCCAG
ATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTAACATCAATG
TGCCAATGAAAACAGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATTGAGGAAG
ATCGGAAACTACTGATCCAGGCGGCTATTGTGAGAATTATGAAAATGAGGAAGGTTCTAA
AACACCAGCAGTTACTCGGAGAAGTCCTAACCCAGCTGTCCTCAAGATTCAAGCCTCGGG
TCCCAGTAATTAAGAAATGCATTGACATTCTGATCGAGAAAGAATATTTGGAGCGAGTTG
ATGGTGAAAAGGACACCTATAGTTACCTGGCTTAACCCTTCCAGAAGGGTCTGCGCGTGG
CAGCATCGCTCCGAGGGAAGGATGGAGCCGCGTTCCCAGCTGCCCGCCCGCGCATTCGGA
CCTCCCTCCTCAGCCCACGGGCGGGCTCGGGGCATCAGAACTGCTCAGGATCGATCCACT
TCGAGTCTGTACATAGGGACACCAACGCCATTTAACCTAATTTAAGAACCGAGGGGACGG
GCCCTTCGGCGCTGAGGGCTGCATGCTATGCATCTAAATCAGTACATCAGCCACGGGGTC
ACGGCCGCAGGCTCCGGCGACCCCAGGACGTCGGCAGCACTTGGAGAGCAAGTCTAAACG
GCCCCGCGTGTAATCTGCTATGAAAAACCATTTGTATAGTGTGTTTCATTTTTTAATGTG
TGAAAATAAAGAAAATTAAAGGATTTCTGTACAAGTCGCATTTGGTTTTGTTTTAAGTTT
ACTAATTTCTATATGTAAATAAAATATATAATGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTTATGTGGAACTGGGGCTGAATGAAGATGATGCATTTGCGAAGGGCCCTACGCTAA
CAGTGTACAAGGAATCCTTTGAATCTCAGTTTTTGGCTGACACAGAGAGATTTTATACCA
GAGAGAGTACCGAATTCTTGCAGCAGAACCCAGTTACTGAATATATGAAAAAGGCAGAGG
CTCGTCTGCTGGAGGAACAGCGGAGAGTCCAGGTCTACCTTCATGAAAGCACCCAGGACG
AGCTAGCAAGGAAGTGTGAGCAGGTGCTTATTGAGAAACACTTGGAAATCTTCCACACAG
AATTTCAGAATTTACTGGATGCTGACAAAAATGAAGATTTGGGTCGCATGTATAATCTTG
TATCTAGAATCCAGGATGGCCTGGGAGAATTGAAAAAACTCCTGGAGACACACATTCATA
ATCAGGGTCTTGCAGCAATTGAAAAATGTGGAGAAGCTGCTTTGAATGACCCCAAAATGT
ATGTACAGACAGTGTTGGATGTTCATAAAAAGTACAACGCCCTGGTGATGTCCGCGTTCA
ACAATGATGCTGGCTTTGTGGCTGCGCTGGACAAGGCTTGCGGGCGCTTCATAAACAACA
ACGCAGTTACCAAAATGGCTCAGTCTTCCAGCAAATCCCCTGAGTTGCTGGCTCGATACT
GTGACTCCTTGTTGAAGAAGAGTTCCAAGAACCCAGAAGAAGCAGAGCTAGAAGACACAC
TCAATCAAGTGATGGTGGTCTTCAAGTACATAGAGGACAAAGATGTGTTCCAGAAGTTCT
ATGCAAAGATGCTGGCCAAGAGGCTTGTCCATCAGAATAGCGCCAGCGATGATGCTGAAG
CAAGCATGATCTCTAAGTTAAAGCAAGCTTGTGGTTTTGAGTATACCTCTAAACTTCAGC
GGATGTTTCAAGATATTGGTGTAAGCAAAGATTTGAACGAGCAGTTCAAAAAGCACCTGA
CGAATTCAGAACCACTGGACTTGGATTTCAGTATTCAAGTTCTCAGCTCCGGATCGTGGC
CCTTTCAGCAATCCTGTACGTTTGCCTTGCCGTCAGAGTTGGAACGGAGTTATCAGCGAT
TCACAGCTTTTTATGCTAGCCGTCACAGTGGGAGAAAATTGACATGGTTGTATCAGCTGT
CTAAAGGAGAGTTAGTAACAAACTGCTTCAAAAACAGATACACTTTGCAGGCATCTACGT
TCCAGATGGCCATCCTGCTCCAGTACAACACAGAAGACGCTTACGCTGTGCAGCAGCTGA
CCGACAGCACCCAGATCAAAATGGACATTTTGGCACAAGTCCTACAGATTTTATTGAAGT
CAAAGTTATTGGTCTTGGAAGATGAAAATGCAAATGTTGATGAGGTGGAATTGAAGCCAG
ATACCTTAATAAAATTATATCTTGGTTATAAAAATAAGAAATTAAGGGTTAACATCAATG
TGCCAATGAAAACAGAACAGAAGCAGGAACAAGAAACCACACACAAAAACATTGAGGAAG
ATCGGAAACTACTGATCCAGGCGGCTATTGTGAGAATTATGAAAATGAGGAAGGTTCTAA
AACACCAGCAGTTACTCGGAGAAGTCCTAACCCAGCTGTCCTCAAGATTCAAGCCTCGGG
TCCCAGTAATTAAGAAATGCATTGACATTCTGATCGAGAAAGAATATTTGGAGCGAGTTG
ATGGTGAAAAGGACACCTATAGTTACCTGGCTTAACCCTTCCAGAAGGGTCTGCGCGTGG
CAGCATCGCTCCGAGGGAAGGATGGAGCCGCGTTCCCAGCTGCCCGCCCGCGCATTCGGA
CCTCCCTCCTCAGCCCACGGGCGGGCTCGGGGCATCAGAACTGCTCAGGATCGATCCACT
TCGAGTCTGTACATAGGGACACCAACGCCATTTAACCTAATTTAAGAACCGAGGGGACGG
GCCCTTCGGCGCTGAGGGCTGCATGCTATGCATCTAAATCAGTACATCAGCCACGGGGTC
ACGGCCGCAGGCTCCGGCGACCCCAGGACGTCGGCAGCACTTGGAGAGCAAGTCTAAACG
GCCCCGCGTGTAATCTGCTATGAAAAACCATTTGTATAGTGTGTTTCATTTTTTAATGTG
TGAAAATAAAGAAAATTAAAGGATTTCTGTACAAGTCGCATTTGGTTTTGTTTTAAGTTT
ACTAATTTCTATATGTAAATAAAATATATAATGATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q75MQ1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q75MQ1_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2122, gnl|bosTau2|chr4 (14174386-14172247)
               

               
               1-2122, gnl|Hg17|chr5 (127150029-127147762)
               

               
               1-2122, gnl|Mm7|chr6 (47538477-47562754)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2122, gnl|bosTau2|chr4 (14174386-14172247)
               

               
               1-2122, gnl|Hg17|chr5 (127150029-127147762)
               

               
               1-2122, gnl|Mm7|chr6 (47538477-47562754)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               eye (0.341006)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-2122, gnl\|bosTau2\|chr4 (14174386-14172247)
	1-2122, gnl\|Hg17\|chr5 (127150029-127147762)
	1-2122, gnl\|Mm7\|chr6 (47538477-47562754)

	eye (0.341006)
	fty (0.17584)
	tbr (0.154178)
	spl (0.143184)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	med (0.116252)
	nbm (0.0993246)
	ldo (0.0970026)