Non-Coding RNA Search

Ss1.1-Pig4-TMW8038J15.3

Sequence:


               
               TTCAACCTGTGTGACAGGACAACTGATAAAATGTACATGGAGGTGGATGCAGAGGTGGTC
CCCTGAGCCATGGTTTTTACCATGTTATTACGTTTTGATACCTCCTGCACAGGATAAAGG
GCAGGGAGTACAGCTGGCTTGGCTGCATCACCATCCTACAAATCTTAGGGTCCAAAGAGG
ACCCAGATGCAAGTTGGACAAATGTAACAGTCAAAAGAAAGGATGGGGGAGATGGGCTTA
AGTGGCCCCCAAGCTTGCAGAGGTGGTTGTGCCACTACTGCTTAGTCTCTCCCCCTTTCT
CCTGCCAGAGGTTCAAGTCAACATGGTCAGCTTAGGAGTGCAGAGCAAGTCCAGGTGGCA
GGGCTGAGGGTTCAGAGAGAGAATGACCCAGGCAGAATGCTGAATTCCTCACATCCACCT
GCATTCCTGACTGGACACCGAGTCCACATGCCAATTGCCAACCACAGCCTGTTTTACTCC
CTCCACACTGTGCTGTGCAAACATGCATCCCACACTGTTGGCTGATGGACACACGCTCGT
CTTTGTCCCATTTCTAGTGGGCTGCATCCCTGGAAAAGTCAAGCTTGCACCAGTCGTACT
TGGTTTTCCCATCAGAAGATTGTGGGGTCAGATCACACTCCAGATCAAAGGTCCTACTCT
CATTATCGCTATAGAAATATCGACAAACATCATAGATCGTTAATTTTTAAAAACACAGAA
ACAAAAATTCAGTGGTACTTAGTATAAAATTTTTCAAAAGCACTTTTTAGTCAGTCATTG
AGGTCAAACTATCAAGTAGTCATCTTAAGCTGCACTTAATATAAAAGGCACTACATACTC
TATCTACCAAGTTGATCTTCAGTGAGTGTGCCTGGTTTGATTAGGACAAATTTCATTGAG
TCAGAAATTGGGTACTGCCCTCCCCGAGGTCCAGTTCCGAGGGTCTTCCTGGGGAAAATC
TGAAAGATACCTGTCTAGTCTCCTCATGGTTCCCTAAGAGATGAGTCAGAGATGCTGGCC
TTTTTCTCACTACAGACTTCTCTGTCATAAACTTAAGAATTAGAAATCATGGCTGTTGAT
CTCACAGACTCATCTGCAGCATAAGTACATTTCTTTGCATAGTATATATTTTTGCTACAT
AACACAAAGTCCTATAAGTAATATAACAGCTATAATAGGCATAGTAATGGAAAATCATTA
AATATATCTAAAATAGAGATTTATAGTTAAGTAAAACTCCACTCAAACTGCAGAAATTTC
GAGGGCTATTTGAAAATTATGGAAACAGGAAAAAAACTTTATAAGAATGAACATCAAGAA
GATTCCAAGTTTTCACAGTATCATTGTACCCCATGCCCTTGTGAAGTGACCATGTTAGGG
TCTGGTCCTGTTTCATGAAAGTAGGAGGATCTTTTCGAAATGAAAAGGAACAACATCCAT
TTAAGTGTGGCAGAGGTACCACCAGGGAGAAAATAAAGGTTGGAGATTTATGAGATGTGG
TGTCTATGAAGAATAACTTTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAACCTGTGTGACAGGACAACTGATAAAATGTACATGGAGGTGGATGCAGAGGTGGTC
CCCTGAGCCATGGTTTTTACCATGTTATTACGTTTTGATACCTCCTGCACAGGATAAAGG
GCAGGGAGTACAGCTGGCTTGGCTGCATCACCATCCTACAAATCTTAGGGTCCAAAGAGG
ACCCAGATGCAAGTTGGACAAATGTAACAGTCAAAAGAAAGGATGGGGGAGATGGGCTTA
AGTGGCCCCCAAGCTTGCAGAGGTGGTTGTGCCACTACTGCTTAGTCTCTCCCCCTTTCT
CCTGCCAGAGGTTCAAGTCAACATGGTCAGCTTAGGAGTGCAGAGCAAGTCCAGGTGGCA
GGGCTGAGGGTTCAGAGAGAGAATGACCCAGGCAGAATGCTGAATTCCTCACATCCACCT
GCATTCCTGACTGGACACCGAGTCCACATGCCAATTGCCAACCACAGCCTGTTTTACTCC
CTCCACACTGTGCTGTGCAAACATGCATCCCACACTGTTGGCTGATGGACACACGCTCGT
CTTTGTCCCATTTCTAGTGGGCTGCATCCCTGGAAAAGTCAAGCTTGCACCAGTCGTACT
TGGTTTTCCCATCAGAAGATTGTGGGGTCAGATCACACTCCAGATCAAAGGTCCTACTCT
CATTATCGCTATAGAAATATCGACAAACATCATAGATCGTTAATTTTTAAAAACACAGAA
ACAAAAATTCAGTGGTACTTAGTATAAAATTTTTCAAAAGCACTTTTTAGTCAGTCATTG
AGGTCAAACTATCAAGTAGTCATCTTAAGCTGCACTTAATATAAAAGGCACTACATACTC
TATCTACCAAGTTGATCTTCAGTGAGTGTGCCTGGTTTGATTAGGACAAATTTCATTGAG
TCAGAAATTGGGTACTGCCCTCCCCGAGGTCCAGTTCCGAGGGTCTTCCTGGGGAAAATC
TGAAAGATACCTGTCTAGTCTCCTCATGGTTCCCTAAGAGATGAGTCAGAGATGCTGGCC
TTTTTCTCACTACAGACTTCTCTGTCATAAACTTAAGAATTAGAAATCATGGCTGTTGAT
CTCACAGACTCATCTGCAGCATAAGTACATTTCTTTGCATAGTATATATTTTTGCTACAT
AACACAAAGTCCTATAAGTAATATAACAGCTATAATAGGCATAGTAATGGAAAATCATTA
AATATATCTAAAATAGAGATTTATAGTTAAGTAAAACTCCACTCAAACTGCAGAAATTTC
GAGGGCTATTTGAAAATTATGGAAACAGGAAAAAAACTTTATAAGAATGAACATCAAGAA
GATTCCAAGTTTTCACAGTATCATTGTACCCCATGCCCTTGTGAAGTGACCATGTTAGGG
TCTGGTCCTGTTTCATGAAAGTAGGAGGATCTTTTCGAAATGAAAAGGAACAACATCCAT
TTAAGTGTGGCAGAGGTACCACCAGGGAGAAAATAAAGGTTGGAGATTTATGAGATGTGG
TGTCTATGAAGAATAACTTTCCCT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1524, gnl|bosTau2|chr5 (29169323-29167772)
               

               
               1-1524, gnl|Hg17|chr12 (69201241-69199687)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1524, gnl|bosTau2|chr5 (29169323-29167772)
               

               
               1-1524, gnl|Hg17|chr12 (69201241-69199687)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               csk (0.140746)

	1-1524, gnl\|bosTau2\|chr5 (29169323-29167772)
	1-1524, gnl\|Hg17\|chr12 (69201241-69199687)