Non-Coding RNA Search

Ss1.1-Pig4-TMW8038J16.3

Sequence:


               
               AAAGAGGAGGCTTTAAATAAAGTGCAGACGAGCAACTTCAAAGACCAAAAGGAACTAAGT
GTCAGTGTGCGGCGACTGGCTATTCTGAAGGAAGACATGGAAATGAAACGTCAAGCCCTG
GATCAGCTCAGTGAGATTGGCCAGGACGTGGGTCAATTACTTGATAATCCTAAAGCCTCC
AAGAAGATCAACAGTGACTCAGAGGAACTGACTCAGAGATGGGATTCTTTGGTTCAAAGA
CTAGAAGATTCCTCCAACCAGGTGACTCAGGCTGTTGCAAAGCTGGGAATGTCCCAGATT
CCTCAGAAGGATCTTTTGGAGACGGTTCGCCTAAGAGAACAAGTAACTACCAAAAGGACT
AAGCAAGAGCTGCCACCTCCTCCTCCCCCGAAGAAGAGACAGATCCCGGTGGAGATGGAA
GCTAAGAAAAAGTTTGATGCCTTAAGTGCTGAGCTGTTGAACTGGATCTTGAAATCAAAG
ACTGCCATTCAGGCCACAGAGATAAAAGAGTATAAGAAGATGCAAGAAACGTCGGAAATG
AAAAAGAACTTGAAGAGATTAGAGAAAGAGCAGACAGAGAGAAACCCCAGACTGGAGGAA
TTAAACCAAACTGGACAAATCCTTTTGGAGCAAATGGGAAAAGAAGGTCTTCCTACTGAA
GAAATAAAAAATATTCTGGAGAAGGTATCATCAGAATGGAAGAAGGTAGCGCAGCATTTG
GAAGATCTGGCGAGAAAGATTCAGCTACAGGAAGATATAAATGCTTATTTTAAGCAGCTT
GATGAGCTTGAAACGACCATGAAGACGAAGGAGGAGTGGGTAAAACACACTCCTTTTTCA
GCATCTCCCCAGCAGTCTTTGCCGAGCCTGAAGGACACCTGTCAGCGGGAATTGACACAC
CTCCACAGCCTGCACCCCAAAATTGAAACCCTGCGTGCAAGCTGCTCAGCCCTGAAGGCT
CGGCCTTCTGCCCCAGATTTTGTCCAGCAGGGTTTTGAGAGCTTAGTGGGCCGCTACCAA
GCTGTGCAACAGGATTTAGAGGAGCATCACCAACAGCTCGAAAATGAACTGAAGAGCCGA
CCTGGACGTGCGTATTTGGAAACATTGAAAACGCTGACAGATCTGCTAAATAATTCAGAA
AGTAAGGCCCAGGTGTCTTCGAATGTCTTGAATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAGGAGGCTTTAAATAAAGTGCAGACGAGCAACTTCAAAGACCAAAAGGAACTAAGT
GTCAGTGTGCGGCGACTGGCTATTCTGAAGGAAGACATGGAAATGAAACGTCAAGCCCTG
GATCAGCTCAGTGAGATTGGCCAGGACGTGGGTCAATTACTTGATAATCCTAAAGCCTCC
AAGAAGATCAACAGTGACTCAGAGGAACTGACTCAGAGATGGGATTCTTTGGTTCAAAGA
CTAGAAGATTCCTCCAACCAGGTGACTCAGGCTGTTGCAAAGCTGGGAATGTCCCAGATT
CCTCAGAAGGATCTTTTGGAGACGGTTCGCCTAAGAGAACAAGTAACTACCAAAAGGACT
AAGCAAGAGCTGCCACCTCCTCCTCCCCCGAAGAAGAGACAGATCCCGGTGGAGATGGAA
GCTAAGAAAAAGTTTGATGCCTTAAGTGCTGAGCTGTTGAACTGGATCTTGAAATCAAAG
ACTGCCATTCAGGCCACAGAGATAAAAGAGTATAAGAAGATGCAAGAAACGTCGGAAATG
AAAAAGAACTTGAAGAGATTAGAGAAAGAGCAGACAGAGAGAAACCCCAGACTGGAGGAA
TTAAACCAAACTGGACAAATCCTTTTGGAGCAAATGGGAAAAGAAGGTCTTCCTACTGAA
GAAATAAAAAATATTCTGGAGAAGGTATCATCAGAATGGAAGAAGGTAGCGCAGCATTTG
GAAGATCTGGCGAGAAAGATTCAGCTACAGGAAGATATAAATGCTTATTTTAAGCAGCTT
GATGAGCTTGAAACGACCATGAAGACGAAGGAGGAGTGGGTAAAACACACTCCTTTTTCA
GCATCTCCCCAGCAGTCTTTGCCGAGCCTGAAGGACACCTGTCAGCGGGAATTGACACAC
CTCCACAGCCTGCACCCCAAAATTGAAACCCTGCGTGCAAGCTGCTCAGCCCTGAAGGCT
CGGCCTTCTGCCCCAGATTTTGTCCAGCAGGGTTTTGAGAGCTTAGTGGGCCGCTACCAA
GCTGTGCAACAGGATTTAGAGGAGCATCACCAACAGCTCGAAAATGAACTGAAGAGCCGA
CCTGGACGTGCGTATTTGGAAACATTGAAAACGCTGACAGATCTGCTAAATAATTCAGAA
AGTAAGGCCCAGGTGTCTTCGAATGTCTTGAATGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-238, + strand, RNAz p=0.94535
               

               
               121-240, - strand, RNAz p=0.840354

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-238, + strand, RNAz p=0.94535
               

               
               121-240, - strand, RNAz p=0.840354

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               82-280, gnl|bosTau2|chr9 (47343514-47343317)
               

               
               82-280, gnl|canFam2|chr1 (38910734-38910947)
               

               
               82-280, gnl|danRer3|chr14 (7886549-7886768)
               

               
               82-280, gnl|dasNov1|scaffold_58721 (49252-49464)
               

               
               82-280, gnl|echTel1|scaffold_286598 (40066-39853)
               

               
               82-280, gnl|fr1|chrUn (173084805-173085007)
               

               
               82-280, gnl|galGal2|chr3 (44991317-44991530)
               

               
               82-280, gnl|hg17|chr6 (144810404-144810617)
               

               
               82-280, gnl|Hg17|chr6 (144810431-144810630)
               

               
               82-280, gnl|loxAfr1|scaffold_1228 (31127-31340)
               

               
               82-280, gnl|mm7|chr10 (12428306-12428092)
               

               
               82-280, gnl|Mm7|chr10 (12428277-12428077)
               

               
               82-280, gnl|monDom2|scaffold_0 (62946733-62946520)
               

               
               82-280, gnl|oryCun1|scaffold_201814 (84388-84176)
               

               
               82-280, gnl|panTro1|chr5 (147733032-147733245)
               

               
               82-280, gnl|rheMac2|chr4 (119232382-119232169)
               

               
               82-280, gnl|rn3|chr1 (7461719-7461506)
               

               
               82-280, gnl|tetNig1|chr14 (3110373-3110185)
               

               
               82-280, gnl|xenTro1|scaffold_243 (391194-391396)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-280, gnl|bosTau2|chr9 (47343514-47343317)
               

               
               82-280, gnl|canFam2|chr1 (38910734-38910947)
               

               
               82-280, gnl|danRer3|chr14 (7886549-7886768)
               

               
               82-280, gnl|dasNov1|scaffold_58721 (49252-49464)
               

               
               82-280, gnl|echTel1|scaffold_286598 (40066-39853)
               

               
               82-280, gnl|fr1|chrUn (173084805-173085007)
               

               
               82-280, gnl|galGal2|chr3 (44991317-44991530)
               

               
               82-280, gnl|hg17|chr6 (144810404-144810617)
               

               
               82-280, gnl|Hg17|chr6 (144810431-144810630)
               

               
               82-280, gnl|loxAfr1|scaffold_1228 (31127-31340)
               

               
               82-280, gnl|mm7|chr10 (12428306-12428092)
               

               
               82-280, gnl|Mm7|chr10 (12428277-12428077)
               

               
               82-280, gnl|monDom2|scaffold_0 (62946733-62946520)
               

               
               82-280, gnl|oryCun1|scaffold_201814 (84388-84176)
               

               
               82-280, gnl|panTro1|chr5 (147733032-147733245)
               

               
               82-280, gnl|rheMac2|chr4 (119232382-119232169)
               

               
               82-280, gnl|rn3|chr1 (7461719-7461506)
               

               
               82-280, gnl|tetNig1|chr14 (3110373-3110185)
               

               
               82-280, gnl|xenTro1|scaffold_243 (391194-391396)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	119-238, + strand, RNAz p=0.94535
	121-240, - strand, RNAz p=0.840354

	82-280, gnl\|bosTau2\|chr9 (47343514-47343317)
	82-280, gnl\|canFam2\|chr1 (38910734-38910947)
	82-280, gnl\|danRer3\|chr14 (7886549-7886768)
	82-280, gnl\|dasNov1\|scaffold_58721 (49252-49464)
	82-280, gnl\|echTel1\|scaffold_286598 (40066-39853)
	82-280, gnl\|fr1\|chrUn (173084805-173085007)
	82-280, gnl\|galGal2\|chr3 (44991317-44991530)
	82-280, gnl\|hg17\|chr6 (144810404-144810617)
	82-280, gnl\|Hg17\|chr6 (144810431-144810630)
	82-280, gnl\|loxAfr1\|scaffold_1228 (31127-31340)
	82-280, gnl\|mm7\|chr10 (12428306-12428092)
	82-280, gnl\|Mm7\|chr10 (12428277-12428077)
	82-280, gnl\|monDom2\|scaffold_0 (62946733-62946520)
	82-280, gnl\|oryCun1\|scaffold_201814 (84388-84176)
	82-280, gnl\|panTro1\|chr5 (147733032-147733245)
	82-280, gnl\|rheMac2\|chr4 (119232382-119232169)
	82-280, gnl\|rn3\|chr1 (7461719-7461506)
	82-280, gnl\|tetNig1\|chr14 (3110373-3110185)
	82-280, gnl\|xenTro1\|scaffold_243 (391194-391396)