Ss1.1-Pig4-TMW8038K02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCTGCAGCGGGAGCGCCGGTTCCTGGAGCCCCGGGCCCGGTTTTATGCTGCCGAGGT GGCCAGTGCCATTGGCTACCTGCACTCCCTCCACATCATTTACAGGGACCTGAAGCCAGA GAACATTCTCTTGGACTGCCAGGGACACGTGGTGCTGACAGATTTTGGCCTCTGCAAGGA AGGTGTGGAGCCGGAGGAGACTACATCCACGTTTTGTGGCACCCCCGAGTACTTGGCTCC AGAAGTACTTCGGAAAGAGCCTTATGATCGGGCAGTGGATTGGTGGTGCTTGGGGGCGGT TCTCTACGAGATGCTGCACGGCCTGCCACCCTTCTACAACCAAGATGTGTCGCAGATGTA TGAGAACATCCTGCATCAGCCACTACGGATCCCCGGGGGCCGGACCGTGGCCGCCTGTGA CCTCCTGCAAGCTCTTCTCCACAAGGACCAGAGGCAGCGGCTGGGCTCCAAAACAGACTT TCTTGAGATAAAGAACCATGTATTCTTCAGCCCCATAAACTGGGATGACTTATACCACAA GAGGCTGACTCCACCCTTCAACCCAAATGTGGCAGGCCCTGCTGACCTGAAACACTTTGA CCCAGAGTTCACCCAAGAAGCCGTGTCAAAGTCCATTGGCTGCACTCCCGACACGATGGC CAGCAGCTCTGGGGCCTCAAGTGCCTTCCTGGGATTTTCCTACGCGCCGGAGGACGAGGC CATCTTGGATTGTTAGACGAGAAGCACCTGAGAAACCACGGAGCCAGCTGGTATCTCCCA CTGCCCCAGGAATTATGGAAGATGAAGTTAGAAGCCCATGGAAAACACACCAATGACAGT GACATTGACCTACTGGGAATCAAAAACCAGGTCACGAAGAGCTACTGTTACGTTGACCTG TAATTCTGAAACACTCTGATTTGATTTCCACCTTCATAGCGTCTGCCAATAGACAAATGT GGAACGTGGTGAGGGAGAAGCCAAAATTCACCCAACTTTCCAAAGCCAAAAGCAAGAGCG TGTAATTGTCAGAAATGTGATAGTACTGTCAAAAGTACACAACCCACTATGGGCTGTGAA ACACATAATTGCTCTATCTGTTCTAGGACTGTAAAATCACAACATTTTCACCAGGATAGA AAATAAAAATGAAAAATGACGGTAAAAAAAAAAAAAATATCAGAACAGACACATTCACAC CTGTTTATTAAACACATTTTAAGCTTCATAGGTATTATCTACAAAACTCACAATAAACCA GCATTTAGAAATTAACCTCACTTTACAGATAAGAAATATTCACTCAGAGACAGTAAGCAA CTTGCCCAAAGTCAGCCAGCTGGTACAAGACACAAACAGGAACTGAACTTGGTGGCAGCT GATGCTAAGGTGCTTGCTTTTTCTACAGCCTTCAAAAGTGGAAGAGGTGCTCTGGGCAGG CCCTCTTTCCATCTTCTAGCAAACACTGACTGCAAACTGTACTCACCCAATTTTGCACCA AAAGACAGCATCCTCAGGAAGGGAAATCACAATCACTCTGTTTCCACTTAACTTTGCAGT GACAGTAGGTGTGAAAAGGAAACAGGAGTCTTCTATTTTAAGACCCTAAAACTCCGACTA CTCTGTACATGCTGCAGACTGCAACAAACATCAATCACAAAGACTGCTTTTATCTTTTGA GCCAGCCAGGTAGCGGGCTTAGTACACACATCCACGTTCGCTCAGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCTGCAGCGGGAGCGCCGGTTCCTGGAGCCCCGGGCCCGGTTTTATGCTGCCGAGGT GGCCAGTGCCATTGGCTACCTGCACTCCCTCCACATCATTTACAGGGACCTGAAGCCAGA GAACATTCTCTTGGACTGCCAGGGACACGTGGTGCTGACAGATTTTGGCCTCTGCAAGGA AGGTGTGGAGCCGGAGGAGACTACATCCACGTTTTGTGGCACCCCCGAGTACTTGGCTCC AGAAGTACTTCGGAAAGAGCCTTATGATCGGGCAGTGGATTGGTGGTGCTTGGGGGCGGT TCTCTACGAGATGCTGCACGGCCTGCCACCCTTCTACAACCAAGATGTGTCGCAGATGTA TGAGAACATCCTGCATCAGCCACTACGGATCCCCGGGGGCCGGACCGTGGCCGCCTGTGA CCTCCTGCAAGCTCTTCTCCACAAGGACCAGAGGCAGCGGCTGGGCTCCAAAACAGACTT TCTTGAGATAAAGAACCATGTATTCTTCAGCCCCATAAACTGGGATGACTTATACCACAA GAGGCTGACTCCACCCTTCAACCCAAATGTGGCAGGCCCTGCTGACCTGAAACACTTTGA CCCAGAGTTCACCCAAGAAGCCGTGTCAAAGTCCATTGGCTGCACTCCCGACACGATGGC CAGCAGCTCTGGGGCCTCAAGTGCCTTCCTGGGATTTTCCTACGCGCCGGAGGACGAGGC CATCTTGGATTGTTAGACGAGAAGCACCTGAGAAACCACGGAGCCAGCTGGTATCTCCCA CTGCCCCAGGAATTATGGAAGATGAAGTTAGAAGCCCATGGAAAACACACCAATGACAGT GACATTGACCTACTGGGAATCAAAAACCAGGTCACGAAGAGCTACTGTTACGTTGACCTG TAATTCTGAAACACTCTGATTTGATTTCCACCTTCATAGCGTCTGCCAATAGACAAATGT GGAACGTGGTGAGGGAGAAGCCAAAATTCACCCAACTTTCCAAAGCCAAAAGCAAGAGCG TGTAATTGTCAGAAATGTGATAGTACTGTCAAAAGTACACAACCCACTATGGGCTGTGAA ACACATAATTGCTCTATCTGTTCTAGGACTGTAAAATCACAACATTTTCACCAGGATAGA AAATAAAAATGAAAAATGACGGTAAAAAAAAAAAAAATATCAGAACAGACACATTCACAC CTGTTTATTAAACACATTTTAAGCTTCATAGGTATTATCTACAAAACTCACAATAAACCA GCATTTAGAAATTAACCTCACTTTACAGATAAGAAATATTCACTCAGAGACAGTAAGCAA CTTGCCCAAAGTCAGCCAGCTGGTACAAGACACAAACAGGAACTGAACTTGGTGGCAGCT GATGCTAAGGTGCTTGCTTTTTCTACAGCCTTCAAAAGTGGAAGAGGTGCTCTGGGCAGG CCCTCTTTCCATCTTCTAGCAAACACTGACTGCAAACTGTACTCACCCAATTTTGCACCA AAAGACAGCATCCTCAGGAAGGGAAATCACAATCACTCTGTTTCCACTTAACTTTGCAGT GACAGTAGGTGTGAAAAGGAAACAGGAGTCTTCTATTTTAAGACCCTAAAACTCCGACTA CTCTGTACATGCTGCAGACTGCAACAAACATCAATCACAAAGACTGCTTTTATCTTTTGA GCCAGCCAGGTAGCGGGCTTAGTACACACATCCACGTTCGCTCAGGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr13 (52759881-52759776) | |
| 1-106, gnl|canFam2|chr24 (34254185-34254313) | |
| 1-106, gnl|danRer3|chr23 (1433385-1433505) | |
| 1-106, gnl|dasNov1|scaffold_92106 (3134-3262) | |
| 1-106, gnl|echTel1|scaffold_318640 (78633-78505) | |
| 1-106, gnl|fr1|chrUn (151763384-151763262) | |
| 1-106, gnl|galGal2|chr20 (3471636-3471508) | |
| 1-106, gnl|hg17|chr20 (41632669-41632797) | |
| 1-106, gnl|Hg17|chr20 (41632679-41632784) | |
| 1-106, gnl|loxAfr1|scaffold_196406 (1036-1164) | |
| 1-106, gnl|mm7|chr2 (162738722-162738850) | |
| 1-106, gnl|Mm7|chr2 (162738732-162738837) | |
| 1-106, gnl|monDom2|scaffold_6 (9901310-9901182) | |
| 1-106, gnl|oryCun1|scaffold_175429 (42017-41890) | |
| 1-106, gnl|panTro1|chr21 (44071728-44071856) | |
| 1-106, gnl|rheMac2|chr10 (20881259-20881131) | |
| 1-106, gnl|rn3|chr3 (153782293-153782421) | |
| 1-106, gnl|tetNig1|chr9 (1028266-1028144) | |
| 1-106, gnl|xenTro1|scaffold_35 (144035-144163) | |
| 322-481, gnl|bosTau2|chr13 (52753666-52753507) | |
| 322-481, gnl|canFam2|chr24 (34259453-34259660) | |
| 322-481, gnl|danRer3|chr23 (1438067-1438243) | |
| 322-481, gnl|dasNov1|scaffold_1553 (38788-38634) | |
| 322-481, gnl|echTel1|scaffold_318640 (73221-73043) | |
| 322-481, gnl|fr1|chrUn (151762381-151762201) | |
| 322-481, gnl|galGal2|chr20 (3469518-3469328) | |
| 322-481, gnl|hg17|chr20 (41638262-41638467) | |
| 322-481, gnl|Hg17|chr20 (41638274-41638433) | |
| 322-481, gnl|loxAfr1|scaffold_67899 (4928-5106) | |
| 322-481, gnl|mm7|chr2 (162745021-162745223) | |
| 322-481, gnl|Mm7|chr2 (162745033-162745192) | |
| 322-481, gnl|monDom2|scaffold_6 (9877328-9877141) | |
| 322-481, gnl|oryCun1|scaffold_175429 (37655-37508) | |
| 322-481, gnl|panTro1|chr21 (44077302-44077507) | |
| 322-481, gnl|rheMac2|chr10 (20876443-20876238) | |
| 322-481, gnl|rn3|chr3 (153788206-153788408) | |
| 322-481, gnl|tetNig1|chr9 (1027443-1027263) | |
| 322-481, gnl|xenTro1|scaffold_35 (146627-146826) | |
| 571-776, gnl|bosTau2|chr13 (52748447-52748240) | |
| 571-776, gnl|Hg17|chr20 (41646905-41647111) | |
| 571-776, gnl|Mm7|chr2 (162753799-162754005) | |
| 781-1726, gnl|bosTau2|chr13 (52746060-52745097) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr13 (52759881-52759776) | |
| 1-106, gnl|canFam2|chr24 (34254185-34254313) | |
| 1-106, gnl|danRer3|chr23 (1433385-1433505) | |
| 1-106, gnl|dasNov1|scaffold_92106 (3134-3262) | |
| 1-106, gnl|echTel1|scaffold_318640 (78633-78505) | |
| 1-106, gnl|fr1|chrUn (151763384-151763262) | |
| 1-106, gnl|galGal2|chr20 (3471636-3471508) | |
| 1-106, gnl|hg17|chr20 (41632669-41632797) | |
| 1-106, gnl|Hg17|chr20 (41632679-41632784) | |
| 1-106, gnl|loxAfr1|scaffold_196406 (1036-1164) | |
| 1-106, gnl|mm7|chr2 (162738722-162738850) | |
| 1-106, gnl|Mm7|chr2 (162738732-162738837) | |
| 1-106, gnl|monDom2|scaffold_6 (9901310-9901182) | |
| 1-106, gnl|oryCun1|scaffold_175429 (42017-41890) | |
| 1-106, gnl|panTro1|chr21 (44071728-44071856) | |
| 1-106, gnl|rheMac2|chr10 (20881259-20881131) | |
| 1-106, gnl|rn3|chr3 (153782293-153782421) | |
| 1-106, gnl|tetNig1|chr9 (1028266-1028144) | |
| 1-106, gnl|xenTro1|scaffold_35 (144035-144163) | |
| 322-481, gnl|bosTau2|chr13 (52753666-52753507) | |
| 322-481, gnl|canFam2|chr24 (34259453-34259660) | |
| 322-481, gnl|danRer3|chr23 (1438067-1438243) | |
| 322-481, gnl|dasNov1|scaffold_1553 (38788-38634) | |
| 322-481, gnl|echTel1|scaffold_318640 (73221-73043) | |
| 322-481, gnl|fr1|chrUn (151762381-151762201) | |
| 322-481, gnl|galGal2|chr20 (3469518-3469328) | |
| 322-481, gnl|hg17|chr20 (41638262-41638467) | |
| 322-481, gnl|Hg17|chr20 (41638274-41638433) | |
| 322-481, gnl|loxAfr1|scaffold_67899 (4928-5106) | |
| 322-481, gnl|mm7|chr2 (162745021-162745223) | |
| 322-481, gnl|Mm7|chr2 (162745033-162745192) | |
| 322-481, gnl|monDom2|scaffold_6 (9877328-9877141) | |
| 322-481, gnl|oryCun1|scaffold_175429 (37655-37508) | |
| 322-481, gnl|panTro1|chr21 (44077302-44077507) | |
| 322-481, gnl|rheMac2|chr10 (20876443-20876238) | |
| 322-481, gnl|rn3|chr3 (153788206-153788408) | |
| 322-481, gnl|tetNig1|chr9 (1027443-1027263) | |
| 322-481, gnl|xenTro1|scaffold_35 (146627-146826) | |
| 571-776, gnl|bosTau2|chr13 (52748447-52748240) | |
| 571-776, gnl|Hg17|chr20 (41646905-41647111) | |
| 571-776, gnl|Mm7|chr2 (162753799-162754005) | |
| 781-1726, gnl|bosTau2|chr13 (52746060-52745097) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fbs (0.526039) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| rec (0.17307) | |
| cje (0.165235) | |
| cki (0.165235) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| kid (0.129735) | |
| bla (0.124347) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.526039) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| rec (0.17307) | |
| cje (0.165235) | |
| cki (0.165235) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| kid (0.129735) | |
| bla (0.124347) | |
| jej (0.0989218) |