Ss1.1-Pig4-TMW8038K06.3
|
GGGATCAACCAGGCCTTAGGCGCCATGGCCAAAGTCATCACCGACCCCGATATCCTGAAA
ACCTGTGTACCAGACCTAAGTGACAAGCGCCTGGAAGTAGTAGGGCTGGAAGGTGCAATT
GAGATGGGCCAGATCTATACCAAGCTCAAGAATGCTGGACATCGGCTAGCCAAGTGCTCT
GAGATCACCTTCCACACCACAAAAACCCTCCCCATGCAAATCGATGGAGAACCGTGGATG
CAGACGCCCTGTACGATCAAGATCACCCACAGGAACCAGATGCCCATGCTCGTGGGCCCG
CCCCCCCGCTCTTCCAATTTCTTTGGCTTCTTGTGCTGAGGGGGGACACCTCAGCCTCCA
AGCCGGCCTTGAACCCACCTCATTGTCCCTGGACTCTACTCCCTAGGCTCTGTACATTGC
TGCCACACCCTCCTGCCAGCTCAGGGGAGTGTAATACCCTCACAGTATTTATTATCCTGC
ACAACCTCCACTATTCCCCATGAACCCATGCACACACACGCACACACACACACACACACA
CACACACACACAACAGAAAATACATTGAAGTGCCTCTCTGAATAAAATAACTTTTTTTTC
CCACTGGGATAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGATCAACCAGGCCTTAGGCGCCATGGCCAAAGTCATCACCGACCCCGATATCCTGAAA
ACCTGTGTACCAGACCTAAGTGACAAGCGCCTGGAAGTAGTAGGGCTGGAAGGTGCAATT
GAGATGGGCCAGATCTATACCAAGCTCAAGAATGCTGGACATCGGCTAGCCAAGTGCTCT
GAGATCACCTTCCACACCACAAAAACCCTCCCCATGCAAATCGATGGAGAACCGTGGATG
CAGACGCCCTGTACGATCAAGATCACCCACAGGAACCAGATGCCCATGCTCGTGGGCCCG
CCCCCCCGCTCTTCCAATTTCTTTGGCTTCTTGTGCTGAGGGGGGACACCTCAGCCTCCA
AGCCGGCCTTGAACCCACCTCATTGTCCCTGGACTCTACTCCCTAGGCTCTGTACATTGC
TGCCACACCCTCCTGCCAGCTCAGGGGAGTGTAATACCCTCACAGTATTTATTATCCTGC
ACAACCTCCACTATTCCCCATGAACCCATGCACACACACGCACACACACACACACACACA
CACACACACACAACAGAAAATACATTGAAGTGCCTCTCTGAATAAAATAACTTTTTTTTC
CCACTGGGATAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
71-194, gnl|bosTau2|chr5 (33649609-33649486) |
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71-194, gnl|canFam2|chr10 (3272781-3272929) |
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71-194, gnl|danRer3|chr9 (18308266-18308419) |
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71-194, gnl|dasNov1|scaffold_60357 (13709-13602) |
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71-194, gnl|echTel1|scaffold_300194 (2571-2723) |
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71-194, gnl|fr1|chrUn (262276117-262276247) |
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71-194, gnl|hg17|chr12 (54633069-54633218) |
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71-194, gnl|Hg17|chr12 (54633089-54633211) |
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71-194, gnl|loxAfr1|scaffold_4766 (79040-78889) |
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71-194, gnl|mm7|chr10 (128222867-128222715) |
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71-194, gnl|Mm7|chr10 (128222843-128222720) |
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71-194, gnl|oryCun1|scaffold_204377 (116646-116505) |
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71-194, gnl|panTro1|chr10 (55862524-55862673) |
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71-194, gnl|rheMac2|chr11 (53004421-53004570) |
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71-194, gnl|rn3|chr7 (2019851-2019708) |
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71-194, gnl|tetNig1|chr9 (8827429-8827554) |
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71-194, gnl|xenTro1|scaffold_85 (1843584-1843722) |
| |
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255-611, gnl|bosTau2|chr5 (33648980-33648628) |
|
255-611, gnl|Hg17|chr12 (54633735-54634067) |
|
255-611, gnl|Mm7|chr10 (128222275-128221964) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
71-194, gnl|bosTau2|chr5 (33649609-33649486) |
|
71-194, gnl|canFam2|chr10 (3272781-3272929) |
|
71-194, gnl|danRer3|chr9 (18308266-18308419) |
|
71-194, gnl|dasNov1|scaffold_60357 (13709-13602) |
|
71-194, gnl|echTel1|scaffold_300194 (2571-2723) |
|
71-194, gnl|fr1|chrUn (262276117-262276247) |
|
71-194, gnl|hg17|chr12 (54633069-54633218) |
|
71-194, gnl|Hg17|chr12 (54633089-54633211) |
|
71-194, gnl|loxAfr1|scaffold_4766 (79040-78889) |
|
71-194, gnl|mm7|chr10 (128222867-128222715) |
|
71-194, gnl|Mm7|chr10 (128222843-128222720) |
|
71-194, gnl|oryCun1|scaffold_204377 (116646-116505) |
|
71-194, gnl|panTro1|chr10 (55862524-55862673) |
|
71-194, gnl|rheMac2|chr11 (53004421-53004570) |
|
71-194, gnl|rn3|chr7 (2019851-2019708) |
|
71-194, gnl|tetNig1|chr9 (8827429-8827554) |
|
71-194, gnl|xenTro1|scaffold_85 (1843584-1843722) |
| |
|
255-611, gnl|bosTau2|chr5 (33648980-33648628) |
|
255-611, gnl|Hg17|chr12 (54633735-54634067) |
|
255-611, gnl|Mm7|chr10 (128222275-128221964) |
