Non-Coding RNA Search

Ss1.1-Pig4-TMW8038K10.3

Sequence:


               
               GGAATTTGGATTGCTCCCAGAGAAGGAAGTCTTGTTGCTAACGTCGGTGCGCAGCTCGGC
CTCCTGCCACAGCGAGGATAGCGATTTGGAAATAGATTGAGTGGCTGGTCTAGTTGCACA
GATCCCTCATTGTTTGGGCTCCAAGCTGCACGTCTCTGTGTTGATTTTGGCTCTTTTCTG
TGTCTTCTGGCTTTTCAGCTGTTCTGTGTAGTCCCTCCTAGGATATGCAAAGTCAGGAAA
TGCTCAGATTAAATCAGAATGCTGAATCACCTCGCGGCTAGCAATAAAGTGACTTAAGGT
TGTAAAAACAAGACGCCAGGCTTTTGAACTATTTACTTAAGATTCTCTAGCATGACATCT
CTGTTATTGTTTCCAGTGAATATTTACACAGCATCCTAAAATCCATCCCCTGGAAACTGT
CTTCATATGCTCTCAGAGGTCTCCACCAGGTCCGGGAGTATAATTCTATAGTTAGTGTAT
TATTTGCAACATAAATACTGTATTTCCTTCATCAAATGATTGTAGATTATATTTACTTTA
ATCAGACTCATACTCTTAGAAGGCAGTTAAATCATTCCCCTCCACCCTCTGCCCCCCCGC
GGCCCGAACCTGTTCTCTCCAAGGGTCTTGTTTAAAGGTTCCAGACCACATGTGTTTGTA
CCATCAAGAGTTCCTGCTGTGGCACAATGGCTTAAGGATCTGGCGTTGCCACTTTGGGGT
AGGTCTCAGCTGTGGCTCAGATTCGTCCCTGGCCTGGGAACTTCCATATGCCACAGGTGC
------------AAAATAAAGGGAGAGGGAACCTTTGCCACAGGAATTGATGTCCCACTT
AAGCATTATTAAGTCTGTAGTAAGAGGAAGAATTGGGGTGGACTGGCCTCTTGATGCTGG
AAGACCAGCTTGACTGAAAAATTAGAACTGGGATGGAGCTTTTTAGCAGGAAGATTCTGC
TCACATAAGAAGATTCTCTGCTCATCCTTTCTGTTTCTCTTTTACTTAGCAAAGCTTTTT
GTTTGTTTGTTTAATGTAGCTTAAGTGGGACATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTTGGATTGCTCCCAGAGAAGGAAGTCTTGTTGCTAACGTCGGTGCGCAGCTCGGC
CTCCTGCCACAGCGAGGATAGCGATTTGGAAATAGATTGAGTGGCTGGTCTAGTTGCACA
GATCCCTCATTGTTTGGGCTCCAAGCTGCACGTCTCTGTGTTGATTTTGGCTCTTTTCTG
TGTCTTCTGGCTTTTCAGCTGTTCTGTGTAGTCCCTCCTAGGATATGCAAAGTCAGGAAA
TGCTCAGATTAAATCAGAATGCTGAATCACCTCGCGGCTAGCAATAAAGTGACTTAAGGT
TGTAAAAACAAGACGCCAGGCTTTTGAACTATTTACTTAAGATTCTCTAGCATGACATCT
CTGTTATTGTTTCCAGTGAATATTTACACAGCATCCTAAAATCCATCCCCTGGAAACTGT
CTTCATATGCTCTCAGAGGTCTCCACCAGGTCCGGGAGTATAATTCTATAGTTAGTGTAT
TATTTGCAACATAAATACTGTATTTCCTTCATCAAATGATTGTAGATTATATTTACTTTA
ATCAGACTCATACTCTTAGAAGGCAGTTAAATCATTCCCCTCCACCCTCTGCCCCCCCGC
GGCCCGAACCTGTTCTCTCCAAGGGTCTTGTTTAAAGGTTCCAGACCACATGTGTTTGTA
CCATCAAGAGTTCCTGCTGTGGCACAATGGCTTAAGGATCTGGCGTTGCCACTTTGGGGT
AGGTCTCAGCTGTGGCTCAGATTCGTCCCTGGCCTGGGAACTTCCATATGCCACAGGTGC
------------AAAATAAAGGGAGAGGGAACCTTTGCCACAGGAATTGATGTCCCACTT
AAGCATTATTAAGTCTGTAGTAAGAGGAAGAATTGGGGTGGACTGGCCTCTTGATGCTGG
AAGACCAGCTTGACTGAAAAATTAGAACTGGGATGGAGCTTTTTAGCAGGAAGATTCTGC
TCACATAAGAAGATTCTCTGCTCATCCTTTCTGTTTCTCTTTTACTTAGCAAAGCTTTTT
GTTTGTTTGTTTAATGTAGCTTAAGTGGGACATCAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-596, gnl|bosTau2|chr11 (75295299-75294701)
               

               
               1-596, gnl|Hg17|chr9 (122662017-122661438)
               

               
               1-596, gnl|Mm7|chr2 (37359241-37358587)
               


               
               792-1030, gnl|bosTau2|chr11 (75294652-75294407)
               

               
               792-1030, gnl|Hg17|chr9 (122661395-122661137)
               

               
               792-1030, gnl|Mm7|chr2 (37358541-37358321)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr11 (75295299-75294701)
               

               
               1-596, gnl|Hg17|chr9 (122662017-122661438)
               

               
               1-596, gnl|Mm7|chr2 (37359241-37358587)
               


               
               792-1030, gnl|bosTau2|chr11 (75294652-75294407)
               

               
               792-1030, gnl|Hg17|chr9 (122661395-122661137)
               

               
               792-1030, gnl|Mm7|chr2 (37358541-37358321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-596, gnl\|bosTau2\|chr11 (75295299-75294701)
	1-596, gnl\|Hg17\|chr9 (122662017-122661438)
	1-596, gnl\|Mm7\|chr2 (37359241-37358587)

	792-1030, gnl\|bosTau2\|chr11 (75294652-75294407)
	792-1030, gnl\|Hg17\|chr9 (122661395-122661137)
	792-1030, gnl\|Mm7\|chr2 (37358541-37358321)