Ss1.1-Pig4-TMW8038K14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCCCCGGAGAGCAGAGAGCGGAGCGAGCTGGGGAGAGCAGACAAGTTTGAAGGGGAG GGCAGGCAGAGTCAGCAGCCCTCGAGGCGCTCCTCTCCCACCGCCCATCCCTTTCCTCTC TTCTTCCCCAGCTTCTCTCTCAGCCTTTCACTCTTCCCCGAAAAACCCTTATTTAGCCAA AGGAAGGAGGTAAGGGGGAACCCTCTCCCCTACCCCCTTCAAAAACTCCCCAACTTTTCC AGTCCGGAGATCGCAGGGGAGCGAGTGGGCACCCAGCTGGCCATGGAGCTGCTGTGCTGC GAGGTGGACCCGGTCCGCAGGGCCGTGCCGGACGCCAACCTGCTCCACGACGACCGCGTG TTGCAGAACTTGCTGACCATCGAGGAGCGCTACCTTCCCCAGTGCTCCTACTTCAAGTGC GTGCAGAAGGATATCCAGCCCTACATGCGCAGGATGGTGGCCACCTGGATGCTGGAGGTC TGTGAGGAGCAGAAGTGTGAAGAAGAGGTCTTCCCTCTGGCCATCAATTACCTGGACCGC TTCTTGGCCGGAGTCCCAACTCCGAAGACCCATCTGCAGCTTCTGGGGGCCGTGTGCATG TTCCTGGCGTCCAAGCTCAAAGAGACCATTCCGCTGACGGCTGAGAAGTTGTGCATTTAC ACCGACAACTCCATCAAGCCTCAGGAGCTGCTGGAGTGGGAGCTGGTGGTGCTGGGCAAG TTGAAGTGGAACCTGGCGGCTGTCACCCCCCACGACTTCATCGAGCACATTCTTCGCAAG CTGCCTCAGCCCAATGAGAAGCTGTCTCTGATTCGCAAGCACGCGCAGACTTTCATCGCT CTGTGCGCCACTGACTTCAAGTTCGCCATGTACCCGCCGTCGATGATTGCAACTGGAAGT GTGGGGGCCGCCATCTGCGGGCTCCAGCAGGACGAGGACGTGAGCTCGCTCACGGGTGAC GCCCTGGTGGACCTGCTGGCCAGGATCACCAACACCGACGTGGATTGCCTCAAAGCCTGC CAGGAGCAGATTGAGGTCGTGCTGCTCAACAGCCTGCAGCAGTACCGTCAGGACCAGGAC GGATCCAAGTCGGAGGACGAGCTGGACCAAGCCAGCACCCCTACAGACGTGCGGGATATT GACCTGTGAGGATGCCGGGTGGCCCCGACGGGTCCAATCGGCTCTCTCCTTCCTTCTCTC TGGTTGTGTTTTGTTCTCTTATGTTTTAGAATGAAACTTTAAAACAAACAAAAAAACACA CACACAAAAAAAACGAAAAACAAATTCTGCTCCCACCTAGATCATATTTGAAAGATCTTT TAGAAGTGAGAGATAAAGGTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCCCCGGAGAGCAGAGAGCGGAGCGAGCTGGGGAGAGCAGACAAGTTTGAAGGGGAG GGCAGGCAGAGTCAGCAGCCCTCGAGGCGCTCCTCTCCCACCGCCCATCCCTTTCCTCTC TTCTTCCCCAGCTTCTCTCTCAGCCTTTCACTCTTCCCCGAAAAACCCTTATTTAGCCAA AGGAAGGAGGTAAGGGGGAACCCTCTCCCCTACCCCCTTCAAAAACTCCCCAACTTTTCC AGTCCGGAGATCGCAGGGGAGCGAGTGGGCACCCAGCTGGCCATGGAGCTGCTGTGCTGC GAGGTGGACCCGGTCCGCAGGGCCGTGCCGGACGCCAACCTGCTCCACGACGACCGCGTG TTGCAGAACTTGCTGACCATCGAGGAGCGCTACCTTCCCCAGTGCTCCTACTTCAAGTGC GTGCAGAAGGATATCCAGCCCTACATGCGCAGGATGGTGGCCACCTGGATGCTGGAGGTC TGTGAGGAGCAGAAGTGTGAAGAAGAGGTCTTCCCTCTGGCCATCAATTACCTGGACCGC TTCTTGGCCGGAGTCCCAACTCCGAAGACCCATCTGCAGCTTCTGGGGGCCGTGTGCATG TTCCTGGCGTCCAAGCTCAAAGAGACCATTCCGCTGACGGCTGAGAAGTTGTGCATTTAC ACCGACAACTCCATCAAGCCTCAGGAGCTGCTGGAGTGGGAGCTGGTGGTGCTGGGCAAG TTGAAGTGGAACCTGGCGGCTGTCACCCCCCACGACTTCATCGAGCACATTCTTCGCAAG CTGCCTCAGCCCAATGAGAAGCTGTCTCTGATTCGCAAGCACGCGCAGACTTTCATCGCT CTGTGCGCCACTGACTTCAAGTTCGCCATGTACCCGCCGTCGATGATTGCAACTGGAAGT GTGGGGGCCGCCATCTGCGGGCTCCAGCAGGACGAGGACGTGAGCTCGCTCACGGGTGAC GCCCTGGTGGACCTGCTGGCCAGGATCACCAACACCGACGTGGATTGCCTCAAAGCCTGC CAGGAGCAGATTGAGGTCGTGCTGCTCAACAGCCTGCAGCAGTACCGTCAGGACCAGGAC GGATCCAAGTCGGAGGACGAGCTGGACCAAGCCAGCACCCCTACAGACGTGCGGGATATT GACCTGTGAGGATGCCGGGTGGCCCCGACGGGTCCAATCGGCTCTCTCCTTCCTTCTCTC TGGTTGTGTTTTGTTCTCTTATGTTTTAGAATGAAACTTTAAAACAAACAAAAAAACACA CACACAAAAAAAACGAAAAACAAATTCTGCTCCCACCTAGATCATATTTGAAAGATCTTT TAGAAGTGAGAGATAAAGGTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.955006 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.955006 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr5 (62899446-62899281) | |
| 1-159, gnl|Hg17|chr12 (4253181-4253337) | |
| 1-159, gnl|Mm7|chr6 (127175550-127175397) | |
| 476-694, gnl|bosTau2|chr23 (15424610-15424392) | |
| 476-694, gnl|canFam2|chr12 (13603689-13603478) | |
| 476-694, gnl|danRer3|chrUn (13930376-13930589) | |
| 476-694, gnl|dasNov1|scaffold_3629 (35793-35582) | |
| 476-694, gnl|fr1|chrUn (306743200-306743411) | |
| 476-694, gnl|galGal2|chr26 (3510893-3510680) | |
| 476-694, gnl|hg17|chr18 (72592260-72592471) | |
| 476-694, gnl|Hg17|chr6 (42016303-42016085) | |
| 476-694, gnl|loxAfr1|scaffold_1930 (112973-112762) | |
| 476-694, gnl|Mm7|chr17 (45731272-45731490) | |
| 476-694, gnl|mm7|chr4 (138724423-138724208) | |
| 476-694, gnl|monDom2|scaffold_42 (860744-860957) | |
| 476-694, gnl|oryCun1|scaffold_203344 (825-1038) | |
| 476-694, gnl|panTro1|chr17 (69752850-69753061) | |
| 476-694, gnl|rheMac2|chr9 (30553546-30553353) | |
| 476-694, gnl|rn3|chr8 (77091341-77091562) | |
| 476-694, gnl|tetNig1|chrUn_random (89808010-89807801) | |
| 699-851, gnl|bosTau2|chr29 (40814135-40814287) | |
| 699-851, gnl|canFam2|chr18 (51535024-51534813) | |
| 699-851, gnl|danRer3|chr7 (53623624-53623794) | |
| 699-851, gnl|dasNov1|scaffold_3629 (33140-32971) | |
| 699-851, gnl|echTel1|scaffold_314074 (40147-39954) | |
| 699-851, gnl|fr1|chrUn (306743768-306743959) | |
| 699-851, gnl|galGal2|chr5 (14782419-14782625) | |
| 699-851, gnl|hg17|chr11 (69167764-69167959) | |
| 699-851, gnl|Hg17|chr11 (69167786-69167938) | |
| 699-851, gnl|mm7|chr7 (141362712-141362528) | |
| 699-851, gnl|Mm7|chr7 (141362692-141362540) | |
| 699-851, gnl|monDom2|scaffold_182 (970403-970598) | |
| 699-851, gnl|oryCun1|scaffold_193706 (2936-2785) | |
| 699-851, gnl|panTro1|chr9 (70286183-70286378) | |
| 699-851, gnl|rheMac2|chr14 (5126130-5125935) | |
| 699-851, gnl|rn3|chr1 (205517756-205517572) | |
| 699-851, gnl|tetNig1|chrUn_random (89802897-89802713) | |
| 699-851, gnl|xenTro1|scaffold_98 (1821679-1821501) | |
| 1002-1255, gnl|bosTau2|chr5 (62876560-62876299) | |
| 1002-1255, gnl|Hg17|chr12 (4279286-4279541) | |
| 1002-1255, gnl|Mm7|chr6 (127154882-127154614) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr5 (62899446-62899281) | |
| 1-159, gnl|Hg17|chr12 (4253181-4253337) | |
| 1-159, gnl|Mm7|chr6 (127175550-127175397) | |
| 476-694, gnl|bosTau2|chr23 (15424610-15424392) | |
| 476-694, gnl|canFam2|chr12 (13603689-13603478) | |
| 476-694, gnl|danRer3|chrUn (13930376-13930589) | |
| 476-694, gnl|dasNov1|scaffold_3629 (35793-35582) | |
| 476-694, gnl|fr1|chrUn (306743200-306743411) | |
| 476-694, gnl|galGal2|chr26 (3510893-3510680) | |
| 476-694, gnl|hg17|chr18 (72592260-72592471) | |
| 476-694, gnl|Hg17|chr6 (42016303-42016085) | |
| 476-694, gnl|loxAfr1|scaffold_1930 (112973-112762) | |
| 476-694, gnl|Mm7|chr17 (45731272-45731490) | |
| 476-694, gnl|mm7|chr4 (138724423-138724208) | |
| 476-694, gnl|monDom2|scaffold_42 (860744-860957) | |
| 476-694, gnl|oryCun1|scaffold_203344 (825-1038) | |
| 476-694, gnl|panTro1|chr17 (69752850-69753061) | |
| 476-694, gnl|rheMac2|chr9 (30553546-30553353) | |
| 476-694, gnl|rn3|chr8 (77091341-77091562) | |
| 476-694, gnl|tetNig1|chrUn_random (89808010-89807801) | |
| 699-851, gnl|bosTau2|chr29 (40814135-40814287) | |
| 699-851, gnl|canFam2|chr18 (51535024-51534813) | |
| 699-851, gnl|danRer3|chr7 (53623624-53623794) | |
| 699-851, gnl|dasNov1|scaffold_3629 (33140-32971) | |
| 699-851, gnl|echTel1|scaffold_314074 (40147-39954) | |
| 699-851, gnl|fr1|chrUn (306743768-306743959) | |
| 699-851, gnl|galGal2|chr5 (14782419-14782625) | |
| 699-851, gnl|hg17|chr11 (69167764-69167959) | |
| 699-851, gnl|Hg17|chr11 (69167786-69167938) | |
| 699-851, gnl|mm7|chr7 (141362712-141362528) | |
| 699-851, gnl|Mm7|chr7 (141362692-141362540) | |
| 699-851, gnl|monDom2|scaffold_182 (970403-970598) | |
| 699-851, gnl|oryCun1|scaffold_193706 (2936-2785) | |
| 699-851, gnl|panTro1|chr9 (70286183-70286378) | |
| 699-851, gnl|rheMac2|chr14 (5126130-5125935) | |
| 699-851, gnl|rn3|chr1 (205517756-205517572) | |
| 699-851, gnl|tetNig1|chrUn_random (89802897-89802713) | |
| 699-851, gnl|xenTro1|scaffold_98 (1821679-1821501) | |
| 1002-1255, gnl|bosTau2|chr5 (62876560-62876299) | |
| 1002-1255, gnl|Hg17|chr12 (4279286-4279541) | |
| 1002-1255, gnl|Mm7|chr6 (127154882-127154614) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| che (0.272628) | |
| cki (0.165235) | |
| ssp (0.13552) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| cki (0.165235) | |
| ssp (0.13552) | |
| spc (0.113366) | |
| nbm (0.0993246) |