Non-Coding RNA Search

Ss1.1-Pig4-TMW8038K17.5

Sequence:


               
               CGGGCGGAACTAAACTGCGGGTGTGGGCAGGATGACGAACGGGTTTGAATGTGGCACTTT
CTGTCCTCCCTCTGCTCTGCTTCCCCTTGGTGGTTAACCTCAGGCTGCAAGTCGTTTAGC
TGTCGCTGAAGTGGGGGAGCTAGCCCACTAAGACGTACGTGACCCATGCATCTGTCTCAC
AGCCTCTAAAGCCTCTAAGGAGAACAGTCACCACACTCATGGCGGGGATTTTGCGCTCAG
TAGTTCAGAGGCCCCCAGGCAGACTACAAACGGTGACAAAAGGCATGGAATCTCTCATTT
GTACAGATTGGATTCGTCACAAATTTACAAGGTCAAGAATTCCAGATAAAGTTTTTCAGC
CTTCACCTGAAGATCATGAAAAATATGGTGGGGATCCACAGTACCCTCATAAACTGCATA
TCGTTACCAGAATAAAAAGTACAAAAAGACGTCCATATTGGGAGAAAGATATAATAAAGA
TGCTTGGATTAGAAAAAGCACACACTCCTCAAGTTCACAAGAATATCCCTTCAGTGAATG
CAAAACTGAAAGTGGTTAAACATTTGATAAGGATCAAGCCCCTGAAGCTGCCACAAGGTC
TTCCGACAGAGGAGGACATGGCCAACACGTGCCTCAAAAGCAATGGGGAGCTGGTAGTGC
GGTGGCTTCTAAACCCTGCCAACCAGGAAGCGAGGAAGTCCTGACGGCTGAGCAGCTTCA
GAGTAAAAAGTACAAATCATTTCTATTTCAAGATGGTGAGAAAGTGTTCTCATTAAAATC
TGTGTTAAAGTCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCGGAACTAAACTGCGGGTGTGGGCAGGATGACGAACGGGTTTGAATGTGGCACTTT
CTGTCCTCCCTCTGCTCTGCTTCCCCTTGGTGGTTAACCTCAGGCTGCAAGTCGTTTAGC
TGTCGCTGAAGTGGGGGAGCTAGCCCACTAAGACGTACGTGACCCATGCATCTGTCTCAC
AGCCTCTAAAGCCTCTAAGGAGAACAGTCACCACACTCATGGCGGGGATTTTGCGCTCAG
TAGTTCAGAGGCCCCCAGGCAGACTACAAACGGTGACAAAAGGCATGGAATCTCTCATTT
GTACAGATTGGATTCGTCACAAATTTACAAGGTCAAGAATTCCAGATAAAGTTTTTCAGC
CTTCACCTGAAGATCATGAAAAATATGGTGGGGATCCACAGTACCCTCATAAACTGCATA
TCGTTACCAGAATAAAAAGTACAAAAAGACGTCCATATTGGGAGAAAGATATAATAAAGA
TGCTTGGATTAGAAAAAGCACACACTCCTCAAGTTCACAAGAATATCCCTTCAGTGAATG
CAAAACTGAAAGTGGTTAAACATTTGATAAGGATCAAGCCCCTGAAGCTGCCACAAGGTC
TTCCGACAGAGGAGGACATGGCCAACACGTGCCTCAAAAGCAATGGGGAGCTGGTAGTGC
GGTGGCTTCTAAACCCTGCCAACCAGGAAGCGAGGAAGTCCTGACGGCTGAGCAGCTTCA
GAGTAAAAAGTACAAATCATTTCTATTTCAAGATGGTGAGAAAGTGTTCTCATTAAAATC
TGTGTTAAAGTCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61553041|gb|AAX46339.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61553041|gb|AAX46339.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-789, gnl|bosTau2|chr7 (46007462-46008049)
               

               
               192-789, gnl|Hg17|chr6 (57002248-57002833)
               

               
               192-789, gnl|Mm7|chr11 (3423405-3422850)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-789, gnl|bosTau2|chr7 (46007462-46008049)
               

               
               192-789, gnl|Hg17|chr6 (57002248-57002833)
               

               
               192-789, gnl|Mm7|chr11 (3423405-3422850)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               ste (0.676041)
               

               
               cki (0.660939)
               

               
               ssp (0.542079)
               

               
               ldo (0.485013)
               

               
               cst (0.420109)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.676041)
               

               
               cki (0.660939)
               

               
               ssp (0.542079)
               

               
               ldo (0.485013)
               

               
               cst (0.420109)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               nep (0.36785)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	192-789, gnl\|bosTau2\|chr7 (46007462-46008049)
	192-789, gnl\|Hg17\|chr6 (57002248-57002833)
	192-789, gnl\|Mm7\|chr11 (3423405-3422850)

	ste (0.676041)
	cki (0.660939)
	ssp (0.542079)
	ldo (0.485013)
	cst (0.420109)
	nca (0.410621)
	che (0.408942)
	nep (0.36785)
	mgm (0.360685)
	rec (0.346141)
	cut (0.339847)
	fco (0.314416)
	fce (0.271592)
	med (0.232504)
	ece (0.229305)
	tes (0.207814)
	jej (0.197844)
	fcc (0.197785)
	col (0.195008)
	cmu (0.186393)
	gul (0.177588)
	ill (0.175593)
	eye (0.170503)
	cje (0.165235)
	tbr (0.154178)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	sug (0.127291)
	bla (0.124347)
	ebs (0.118301)