Non-Coding RNA Search

Ss1.1-Pig4-TMW8038K23.5

Sequence:


               
               ACCCTGGTGTCTGTGCCCGGGAAAGATGCCATATATTCGCTGGGTGGCAAGACACTGCAG
GATACTCTCTCTAATGCAGTTATATATTACCGGGTAGGTGATAACGTCTGGACAGAGACA
ACCCAGCTAGAGGTGGCTGTGTCAGGGGCTGCTGGCGCCAACCTCAACGGGATCATCTAC
TTACTAGGGGGGGAGGAGAATGACCTGGACTTCTTTACCAAACCATCCCGACTCATCCAG
TGCTTTGACACAGAGACAGACAAGTGCCACGTGAAACCCTACGTGCTGCCGTTTGCTGGC
CGCATGCATGCAGCTGTGCATAAGGATCTGGTGTTTATTGTGGCTGAAGGGGACTCCCTG
GTGTGCTACAATCCCCTGCTAGACAGCTTCACCCGGCTTTGCCTTCCCGAGGCCTGGAGC
TCTGTCCCATCCCTCTGGAAGATCGCCAGCTGTAATGGGAGCATATATGTTTTTCGGGAC
CGATACAAAAAGGGAGATGCCAACACCTACAAGCTTGACCCTGCCACTTCAGCCGTAACT
GTCACCAGAGGCATTAAGGTGCTGCTCACCAATTTGCAGTTCGTGTTGGCCTAAGGCTTG
GAGGGGAAGAGCAGCTGACTTTTGCCCTCCCTTTCTCCAGCACCTACCCATCCAGACTCA
AAAGTCCCTGGGGCCCCCATTCGGGTACTATGTTATTTTTTGGCACATGTTAGAAAGGCA
GCACCTCACCCTTCCCTGAACTCATAAGGATGTTCCGTTTGAGGCTTTTTAGACGCTGCT
CAGCTGGCTGCTTGAACGTAGCATAGGCCAGCCTGTTGTCTGCCACTCTCTGGAAATTCT
GTGCCTCACTTCAGATTGCTCAGAGCAAGCTCTTCTCCATCCTCAGGCACAGCCTCCCCT
CTACCTGATCAATGTTAAATAGAAGCATCCCTGATCCCAGGACAGACGATGCCCCATCTT
CTTTTTTCCTGTATCCTGCAAAGTGGCTAGTTGGTCATTTTTGAACAAAGAATTAAGTGT
TAGAGTTTTCCTGCAGGCTTTGGTTGGGAGAATGGATTAACTGAAGGTGTCCTTCACCAG
CAAGAGTCAACCTTAGATTCAGGATGTTCCATCTGTTGTTCTTTCATCTTTCTGTCAGGA
AATGTATACTTTGGTTTTATTTTTGGCTTATTCCAATGCATAAGCCAGAAAGTAGAAAGG
ATTATTTCTGATTAATAGCAGAAACTTTTTTCAAACTCAAACATGTAAGTTCTCTACTCT
TTTAAAAGCTCTAAGCTAAGCCAAGAGCTAGGAACTGTTCATACAAATAAAAGTTTTGGA
AGGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTGGTGTCTGTGCCCGGGAAAGATGCCATATATTCGCTGGGTGGCAAGACACTGCAG
GATACTCTCTCTAATGCAGTTATATATTACCGGGTAGGTGATAACGTCTGGACAGAGACA
ACCCAGCTAGAGGTGGCTGTGTCAGGGGCTGCTGGCGCCAACCTCAACGGGATCATCTAC
TTACTAGGGGGGGAGGAGAATGACCTGGACTTCTTTACCAAACCATCCCGACTCATCCAG
TGCTTTGACACAGAGACAGACAAGTGCCACGTGAAACCCTACGTGCTGCCGTTTGCTGGC
CGCATGCATGCAGCTGTGCATAAGGATCTGGTGTTTATTGTGGCTGAAGGGGACTCCCTG
GTGTGCTACAATCCCCTGCTAGACAGCTTCACCCGGCTTTGCCTTCCCGAGGCCTGGAGC
TCTGTCCCATCCCTCTGGAAGATCGCCAGCTGTAATGGGAGCATATATGTTTTTCGGGAC
CGATACAAAAAGGGAGATGCCAACACCTACAAGCTTGACCCTGCCACTTCAGCCGTAACT
GTCACCAGAGGCATTAAGGTGCTGCTCACCAATTTGCAGTTCGTGTTGGCCTAAGGCTTG
GAGGGGAAGAGCAGCTGACTTTTGCCCTCCCTTTCTCCAGCACCTACCCATCCAGACTCA
AAAGTCCCTGGGGCCCCCATTCGGGTACTATGTTATTTTTTGGCACATGTTAGAAAGGCA
GCACCTCACCCTTCCCTGAACTCATAAGGATGTTCCGTTTGAGGCTTTTTAGACGCTGCT
CAGCTGGCTGCTTGAACGTAGCATAGGCCAGCCTGTTGTCTGCCACTCTCTGGAAATTCT
GTGCCTCACTTCAGATTGCTCAGAGCAAGCTCTTCTCCATCCTCAGGCACAGCCTCCCCT
CTACCTGATCAATGTTAAATAGAAGCATCCCTGATCCCAGGACAGACGATGCCCCATCTT
CTTTTTTCCTGTATCCTGCAAAGTGGCTAGTTGGTCATTTTTGAACAAAGAATTAAGTGT
TAGAGTTTTCCTGCAGGCTTTGGTTGGGAGAATGGATTAACTGAAGGTGTCCTTCACCAG
CAAGAGTCAACCTTAGATTCAGGATGTTCCATCTGTTGTTCTTTCATCTTTCTGTCAGGA
AATGTATACTTTGGTTTTATTTTTGGCTTATTCCAATGCATAAGCCAGAAAGTAGAAAGG
ATTATTTCTGATTAATAGCAGAAACTTTTTTCAAACTCAAACATGTAAGTTCTCTACTCT
TTTAAAAGCTCTAAGCTAAGCCAAGAGCTAGGAACTGTTCATACAAATAAAAGTTTTGGA
AGGGAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45710081|gb|AAH18974.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45710081|gb|AAH18974.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               360-479, - strand, RNAz p=0.820198
               

               
               1079-1273, + strand, RNAz p=0.987758

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.820198
               

               
               1079-1273, + strand, RNAz p=0.987758

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1325, gnl|bosTau2|chr15 (48769741-48771103)
               

               
               1-1325, gnl|Hg17|chr11 (47551651-47550325)
               

               
               1-1325, gnl|Mm7|chr2 (90760000-90761277)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1325, gnl|bosTau2|chr15 (48769741-48771103)
               

               
               1-1325, gnl|Hg17|chr11 (47551651-47550325)
               

               
               1-1325, gnl|Mm7|chr2 (90760000-90761277)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)

	360-479, - strand, RNAz p=0.820198
	1079-1273, + strand, RNAz p=0.987758

	1-1325, gnl\|bosTau2\|chr15 (48769741-48771103)
	1-1325, gnl\|Hg17\|chr11 (47551651-47550325)
	1-1325, gnl\|Mm7\|chr2 (90760000-90761277)