Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L03.3

Sequence:


               
               AAATAAAAAACTTTTATTTTAAAAATTCAAATATTCTTCAAATGAAAGCTGTCCCTTTAT
TAAACACCCACAAAGTTCCAAGCTTTGTACAAAACACTAAAACAGCTGATCATACTCTTT
TAGAGCAAAATTGCCTGTTCTGTCGCACTTGTTTCCGCATGGCGTTGACATTTGAGTTCC
ACTGTCATAAGATGACCACTTCTTCAAGACTTGCTCAAGAAACACGTTTCTGATCCACAG
AAGTAGATCATGGAAGTTAATGTGGAAGTCAACTGGTGAAGTTTCTCTACCAACTGTTAT
ACTTAATGTCCTCTTCCTCTGAAACCACCACCCCCTCTTCCTCCTCTGAAACCTCCACCT
CCTCTTCCACCTCTAAAACCACCGCCTCTACCACCTCTGCCACCTCCGCCTCTTCCTCCT
CCTCGACCTCCCCTGCCACCGCCTCTTGGAGGTCCCTTCTCACCTGGAGGTCGAGGTAGA
AACCTCTGCAATGGCAGTAGCTTATATGGGTCTATATAAAACTTCTGTAGTTTTTTAAAG
GAAGAGGCCTTCATGTTTTCTGACAATTTAACTGAAAAATAAAAATCTCTAAGTTGTCCA
AATATTTCATCCACTTTTCCAATTTGTTCTTTGTTTTCTAAATAAACTGGAGCATTGAAA
TAAGGCACCTTATTTTCATCTGTGGTACATTTGCAAACTATGTCATCTTCACAGGGATGC
AGGAACTCTCCTAATAACACGACTTGTTCCGGAGGTCCTTGGTCTTGGCCTTTGTTAAAG
CCTCCGCGGCCGCCCCCACGTCCAAATCCTCCTCTGCCGCCGCCGCCTCTGAAATTACCG
CCGCCTCCACCTCGGAAGTGGTTGTTGCCGCTGCCGCCGCGACCGAAGCCGCCACCTCGA
TTAAAGCCTCCACGACCCCCGCCTCGAAAAGACATGCTTGCTCCTACCGGCGCCACGTGC
ACCTCAGGGCTGGGCGCGCACACCCACCCGCCCGGTACTTCCGCCGCGCACGAGCCTCTT
CGGCCGCCGTACGGGCACAAAATAGGGGGGCAGGAAAACTGACTAGAAATTCGAAAAACG
GGTGTGCAAAACCAGCCAGTCTCCAACAGAACCAGAGACGCTGTCACCTGTCCGAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAAAAAACTTTTATTTTAAAAATTCAAATATTCTTCAAATGAAAGCTGTCCCTTTAT
TAAACACCCACAAAGTTCCAAGCTTTGTACAAAACACTAAAACAGCTGATCATACTCTTT
TAGAGCAAAATTGCCTGTTCTGTCGCACTTGTTTCCGCATGGCGTTGACATTTGAGTTCC
ACTGTCATAAGATGACCACTTCTTCAAGACTTGCTCAAGAAACACGTTTCTGATCCACAG
AAGTAGATCATGGAAGTTAATGTGGAAGTCAACTGGTGAAGTTTCTCTACCAACTGTTAT
ACTTAATGTCCTCTTCCTCTGAAACCACCACCCCCTCTTCCTCCTCTGAAACCTCCACCT
CCTCTTCCACCTCTAAAACCACCGCCTCTACCACCTCTGCCACCTCCGCCTCTTCCTCCT
CCTCGACCTCCCCTGCCACCGCCTCTTGGAGGTCCCTTCTCACCTGGAGGTCGAGGTAGA
AACCTCTGCAATGGCAGTAGCTTATATGGGTCTATATAAAACTTCTGTAGTTTTTTAAAG
GAAGAGGCCTTCATGTTTTCTGACAATTTAACTGAAAAATAAAAATCTCTAAGTTGTCCA
AATATTTCATCCACTTTTCCAATTTGTTCTTTGTTTTCTAAATAAACTGGAGCATTGAAA
TAAGGCACCTTATTTTCATCTGTGGTACATTTGCAAACTATGTCATCTTCACAGGGATGC
AGGAACTCTCCTAATAACACGACTTGTTCCGGAGGTCCTTGGTCTTGGCCTTTGTTAAAG
CCTCCGCGGCCGCCCCCACGTCCAAATCCTCCTCTGCCGCCGCCGCCTCTGAAATTACCG
CCGCCTCCACCTCGGAAGTGGTTGTTGCCGCTGCCGCCGCGACCGAAGCCGCCACCTCGA
TTAAAGCCTCCACGACCCCCGCCTCGAAAAGACATGCTTGCTCCTACCGGCGCCACGTGC
ACCTCAGGGCTGGGCGCGCACACCCACCCGCCCGGTACTTCCGCCGCGCACGAGCCTCTT
CGGCCGCCGTACGGGCACAAAATAGGGGGGCAGGAAAACTGACTAGAAATTCGAAAAACG
GGTGTGCAAAACCAGCCAGTCTCCAACAGAACCAGAGACGCTGTCACCTGTCCGAAACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58DP8_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58DP8_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               59-523, + strand, RNAz p=0.994147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-523, + strand, RNAz p=0.994147

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-318, gnl|bosTau2|chr2 (58439570-58439258)
               

               
               1-318, gnl|Hg17|chr4 (111103491-111103176)
               

               
               1-318, gnl|Mm7|chr3 (129664276-129664565)
               


               
               39-176, gnl|bosTau2|chr16 (46544906-46544769)
               


               
               381-523, gnl|bosTau2|chr2 (58435195-58435053)
               

               
               381-523, gnl|Hg17|chr4 (111101250-111101105)
               

               
               381-523, gnl|Mm7|chr3 (129666176-129666330)
               


               
               730-948, gnl|bosTau2|chr2 (58432700-58432480)
               

               
               730-948, gnl|Hg17|chr4 (111095147-111094912)
               

               
               730-948, gnl|Mm7|chr3 (129669940-129670208)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr2 (58439570-58439258)
               

               
               1-318, gnl|Hg17|chr4 (111103491-111103176)
               

               
               1-318, gnl|Mm7|chr3 (129664276-129664565)
               


               
               39-176, gnl|bosTau2|chr16 (46544906-46544769)
               


               
               381-523, gnl|bosTau2|chr2 (58435195-58435053)
               

               
               381-523, gnl|Hg17|chr4 (111101250-111101105)
               

               
               381-523, gnl|Mm7|chr3 (129666176-129666330)
               


               
               730-948, gnl|bosTau2|chr2 (58432700-58432480)
               

               
               730-948, gnl|Hg17|chr4 (111095147-111094912)
               

               
               730-948, gnl|Mm7|chr3 (129669940-129670208)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sin (0.349895)
               

               
               ill (0.175593)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               ill (0.175593)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-318, gnl\|bosTau2\|chr2 (58439570-58439258)
	1-318, gnl\|Hg17\|chr4 (111103491-111103176)
	1-318, gnl\|Mm7\|chr3 (129664276-129664565)

	39-176, gnl\|bosTau2\|chr16 (46544906-46544769)

	381-523, gnl\|bosTau2\|chr2 (58435195-58435053)
	381-523, gnl\|Hg17\|chr4 (111101250-111101105)
	381-523, gnl\|Mm7\|chr3 (129666176-129666330)

	730-948, gnl\|bosTau2\|chr2 (58432700-58432480)
	730-948, gnl\|Hg17\|chr4 (111095147-111094912)
	730-948, gnl\|Mm7\|chr3 (129669940-129670208)

	sin (0.349895)
	ill (0.175593)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	cbl (0.114797)
	jej (0.0989218)