Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L04.3

Sequence:


               
               GTTCAGCCAGGAGGTCATGCTGCGGGTGAAGGAGATGGCCTCGTGCAGCGCGGTGGTGCT
GGAGGAGTCGAAATGCCTGGTCCGGAGCTTCCTGAAGTCAGTGCTGGAAGATGTGAACGA
GAAAGAATGCCTCATGCTCAAGCAGCTCTGGAGCTCCTCCAAAGGCCTGGATTCCCTGTT
CAGCTACCTGCAGGACAAAATCTACCAAGTCTGAGGGCCTCGGCTCACCTGCCCCAGTGC
TCGGGGGCACCGACTTCCAGCTCTGCCCTGTGCTTCAGAAATCAGAGCACAGCGTATGCC
TGGCCAAGGAGTCTGTCAAGGTGTCTCTCTATACCTAGGGTTGTGTCCATTTCCTCGCGT
CCTTTGGTTGCTCCTCATTGGTTTGGTTTTGTGTAACGATGGGAAACGCAGCACACTTGG
CCTCCCCCGTGTCCCCCCCACCCCGCACCTGGCTGGAGAGCTATCGAGGGCTATCTCTTC
CCAGGCCTCTGCCAGGCACCCTTGTCCTGCCCCCACTTGCTGAAATGCACCATCCTGGTC
CAGGAAGGGGAAGACCAGTCTCCCCATTCTCGTGACTCAGGCTGTGTCTACACAGTGCCT
CTGCTTTGGAGACTAGGCTGCCGTGGCTCTCTGGTTCCGTGCAGACCCAGTGACAGGGGA
CGAGCCATTGGAGGGGGTTCCCAGCCCAAAGAGCAGAACGATTGTGTAGAGCCAGCCTCG
GTCTCTTCTCTGATGCAAATCTGTGTGACTTTTAGGGCTTGGTCTTAAAACCCAATTGAG
TGATTTACAAACCCAGATATTGTACATTTAGGGGCGTTTTGTTAAATATATATTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAGCCAGGAGGTCATGCTGCGGGTGAAGGAGATGGCCTCGTGCAGCGCGGTGGTGCT
GGAGGAGTCGAAATGCCTGGTCCGGAGCTTCCTGAAGTCAGTGCTGGAAGATGTGAACGA
GAAAGAATGCCTCATGCTCAAGCAGCTCTGGAGCTCCTCCAAAGGCCTGGATTCCCTGTT
CAGCTACCTGCAGGACAAAATCTACCAAGTCTGAGGGCCTCGGCTCACCTGCCCCAGTGC
TCGGGGGCACCGACTTCCAGCTCTGCCCTGTGCTTCAGAAATCAGAGCACAGCGTATGCC
TGGCCAAGGAGTCTGTCAAGGTGTCTCTCTATACCTAGGGTTGTGTCCATTTCCTCGCGT
CCTTTGGTTGCTCCTCATTGGTTTGGTTTTGTGTAACGATGGGAAACGCAGCACACTTGG
CCTCCCCCGTGTCCCCCCCACCCCGCACCTGGCTGGAGAGCTATCGAGGGCTATCTCTTC
CCAGGCCTCTGCCAGGCACCCTTGTCCTGCCCCCACTTGCTGAAATGCACCATCCTGGTC
CAGGAAGGGGAAGACCAGTCTCCCCATTCTCGTGACTCAGGCTGTGTCTACACAGTGCCT
CTGCTTTGGAGACTAGGCTGCCGTGGCTCTCTGGTTCCGTGCAGACCCAGTGACAGGGGA
CGAGCCATTGGAGGGGGTTCCCAGCCCAAAGAGCAGAACGATTGTGTAGAGCCAGCCTCG
GTCTCTTCTCTGATGCAAATCTGTGTGACTTTTAGGGCTTGGTCTTAAAACCCAATTGAG
TGATTTACAAACCCAGATATTGTACATTTAGGGGCGTTTTGTTAAATATATATTTTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-174, + strand, RNAz p=0.52355

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-174, + strand, RNAz p=0.52355

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152342, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152342, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-840, gnl|bosTau2|chr18 (5588845-5588058)
               

               
               55-840, gnl|Hg17|chr16 (79195945-79195177)
               

               
               55-840, gnl|Mm7|chr8 (115187070-115186275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-840, gnl|bosTau2|chr18 (5588845-5588058)
               

               
               55-840, gnl|Hg17|chr16 (79195945-79195177)
               

               
               55-840, gnl|Mm7|chr8 (115187070-115186275)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sto (0.179824)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	55-840, gnl\|bosTau2\|chr18 (5588845-5588058)
	55-840, gnl\|Hg17\|chr16 (79195945-79195177)
	55-840, gnl\|Mm7\|chr8 (115187070-115186275)