Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L06.5

Sequence:


               
               TCGGGCCCTTTGACCGCGTCCATGATCGCCGTGGCCCGGTGCTTCGCCCAGCCCAACTTC
AAGGTGGACGGCATCCTGAAAACCGTGCTGCGGGACGAGATCATCGCGTGGCACAAAAAA
ACACAGGAGGACCACCTCGTCCCCCCTCTCGGCCGCCGGGCAGCCCGAGAACATGGACAG
CCAGCAGCTGGTGTCCCTGGTTCAGAAGGCCGTGACGGCCATCATGACCCGCCTGCACAA
CCTCGCCCAGTTTGAGGGCGGGGAGAGCAAAGTGAACACCCTGGTGGCCGCCGCCAACAG
CCTGGACAACCTGTGCCGCATGGACCCGCCTGGCACCCCTGGCTGTGAGCGCGAGGCCGG
CCTGCGGCTGGACGGGGACGGTTCCTCCCCTGCCGGTCGGTGCCAGATGGGGTGGGGGGC
AGGTGGGCCTCAGCCAAAGCTTTTCCAGTCACCTTTTAAGCAGCCAGGGCTCCCTGGCGT
GGAACTTCTTGTGAGTTCTTTTTTACTGGACTCCTCCCTCTGTGTGAATGTACAGCTTGA
ACTGCAGGAAGCACTTCTCTGCCGTCATTTTTAACACCTGGAAGTTTCCCCTCGCAGGAG
CTTCGTGCTTTTGTACAGAACTTTGTAGCCAGTGTACAGAAAACCCACTGTGTCAGAGAA
ACAGGAAAGTATGAACAAACTGCGCTGGATTATCTCTGAGCACAAACTCCCACGCTGTGG
TAACCAACCTGGGAATGTCACCGAGCGCCTGCCGCCACCGGACCAGGCCCTGCGCCCTGC
GGGGCCACCCCGTGCCCACATTCGGATTGGGGTCCAGGGAGAACGGAACTTGGGAGCCGA
CGCTGCTCGGGTGTCTTTGTCTAGACGTCCACTCTCACTGTACCTGGAAAACAAAACACT
TCCCTTCTTAACTTAAAAAGCAGCAGCAGAGGTTTGTTCCCTAGCTCCTGTCTGTTCCCA
TTTTTATAAATGTGAGCACTGAGAATGTTCTATCTAAATTTGTACAGTGTGATTTTTTTT
AGAATAAATATTTTATAAAAGCGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGGCCCTTTGACCGCGTCCATGATCGCCGTGGCCCGGTGCTTCGCCCAGCCCAACTTC
AAGGTGGACGGCATCCTGAAAACCGTGCTGCGGGACGAGATCATCGCGTGGCACAAAAAA
ACACAGGAGGACCACCTCGTCCCCCCTCTCGGCCGCCGGGCAGCCCGAGAACATGGACAG
CCAGCAGCTGGTGTCCCTGGTTCAGAAGGCCGTGACGGCCATCATGACCCGCCTGCACAA
CCTCGCCCAGTTTGAGGGCGGGGAGAGCAAAGTGAACACCCTGGTGGCCGCCGCCAACAG
CCTGGACAACCTGTGCCGCATGGACCCGCCTGGCACCCCTGGCTGTGAGCGCGAGGCCGG
CCTGCGGCTGGACGGGGACGGTTCCTCCCCTGCCGGTCGGTGCCAGATGGGGTGGGGGGC
AGGTGGGCCTCAGCCAAAGCTTTTCCAGTCACCTTTTAAGCAGCCAGGGCTCCCTGGCGT
GGAACTTCTTGTGAGTTCTTTTTTACTGGACTCCTCCCTCTGTGTGAATGTACAGCTTGA
ACTGCAGGAAGCACTTCTCTGCCGTCATTTTTAACACCTGGAAGTTTCCCCTCGCAGGAG
CTTCGTGCTTTTGTACAGAACTTTGTAGCCAGTGTACAGAAAACCCACTGTGTCAGAGAA
ACAGGAAAGTATGAACAAACTGCGCTGGATTATCTCTGAGCACAAACTCCCACGCTGTGG
TAACCAACCTGGGAATGTCACCGAGCGCCTGCCGCCACCGGACCAGGCCCTGCGCCCTGC
GGGGCCACCCCGTGCCCACATTCGGATTGGGGTCCAGGGAGAACGGAACTTGGGAGCCGA
CGCTGCTCGGGTGTCTTTGTCTAGACGTCCACTCTCACTGTACCTGGAAAACAAAACACT
TCCCTTCTTAACTTAAAAAGCAGCAGCAGAGGTTTGTTCCCTAGCTCCTGTCTGTTCCCA
TTTTTATAAATGTGAGCACTGAGAATGTTCTATCTAAATTTGTACAGTGTGATTTTTTTT
AGAATAAATATTTTATAAAAGCGAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               62-1041, gnl|bosTau2|chr25 (35291972-35292949)
               

               
               62-1041, gnl|Hg17|chr7 (98254343-98255513)
               

               
               62-1041, gnl|Mm7|chr5 (143887312-143888416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-1041, gnl|bosTau2|chr25 (35291972-35292949)
               

               
               62-1041, gnl|Hg17|chr7 (98254343-98255513)
               

               
               62-1041, gnl|Mm7|chr5 (143887312-143888416)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	62-1041, gnl\|bosTau2\|chr25 (35291972-35292949)
	62-1041, gnl\|Hg17\|chr7 (98254343-98255513)
	62-1041, gnl\|Mm7\|chr5 (143887312-143888416)

	cty (0.20816)
	fcc (0.197785)
	csp (0.161186)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	nbm (0.0993246)