Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L08.3

Sequence:


               
               CATGAGTTTTATTCCAGAGCATCTCAGAAACCCCAGCCAAACTTCCCCAGTCCAGAATAC
ATGATATTTGATCATGAGTTTACGAAGCTAGTAAAAGAACTTGAAGGTGTGATAACTAAA
GCTATCCATAAGTCCAGTGAAGAAGATAAAAAAGAAGAAGAAGTGAAAAAAACATTAGAA
CAGCATGACAGTATTGTGACTCACTACAAAAATATGATTCGAGAGCAAGATCTGCAACTT
GAGGAATTAAAGCAGCAGATTTCCACGTTAAAATGTCAAAACGAACAGCTCCAGACAGCA
GTCACACAGCAAGTATCTCAGATTCAGCAACACAAGGATCAGTATAATCTTCTTAAAGTA
CAGCTAGGAAAAGACAATCAGCCTCAAGGTTCTTACAATGATGGGTCTCAAATGAATGGC
ATTCAACCGGAAGAAATTGGTAGGTTGCGAGAAGAGATAGAAGAATTAAAAAGTAATCAG
GAACTTTTACAAAACCAGCTGGCTGAAAAGGACTCTTTGATTGAAAATTTGAAATCTTCC
CAACCATCACCTGGCGCAAATGAAGAGTCTTCAGCAACAGATTCAGCAAGAGATTCTGAA
CAAATAGCAGACTTGAAACAGGAACTGGCAACATTAAAGTCTCAGTTAAACTCACAATCT
ATAGAAATCACTAAACTACAGACGGAAAAGCAGGAGCTGTTACAGAAAACAGAAGCATTT
GCAAAATCAGTTCCTGAACCAGAACAGAGTGAAACTGTAACAGCTGCAAAAGCTACTGAT
GTAGAAGGAAGACTGTCAGCATTATTACAAGAGACTAAAGAATTAAAGAATGAAATTAAA
GCTCTGTCTGAAGAAAGAACTGCTATTAAAGAGCAGCTGGATGCATCTAACAGTACCATT
GCCATTTTACAAAATGAGAAAAACAAGCTCGAGGTGGACATTACAGATTCAAAAAAAGAA
CAAGATGATCTTTTGGTGCTGTTGGCTGATCAGGATCAGAAAATATTTTCATTAAAGAAT
AAACTCAAGGAACTTGGTCATCCAGTTGAAGAAGAGGATGAACTTGAATCTGGAGACCAA
GATGATGAGGATGATGAAGATGAAGATGATGGCAAGGAACAGGGTCATATCTAGCTTTAA
AATCTTTGGGAATGATAAGAAATTATATTGTATCTTTGAAGATGGAGTCTTAAGACAGTG
CTTTGGTTTGCCTCCACAGAAAATAAAGATTTAGAAACCAGGTGGAAAACATTCACTAAT
AAGACTATTGATGTATTTTTTAAATGATGCCACCCATGTTGCTAATTCTTTTAATCTAAC
TTTATGTAGAACACATATCTCTTATTGAAATTTATTTGAACTGTCCCAAAATATAATTTG
CAAAGAGCTACAGACACCAAAAATGTAACATTTTGAGGCACTTGGTGGCAATGCTATTTG
CCTTAGTTCATTGGTTGTGTATAGAAGTTCTGTATTTGTCTGCTATTTTTACTTTTCAGA
ATTTGTGTCTTTAAATACTAACACATTTGATTTAATGTGTGTTGGAATCATTGTTTCTAA
ATTCAATATTGAGTTCTTAGCTAATGATTTCCTTTTAAAGAAATGGATTTCCTTAAAGGC
AAGAGAGCAAGGTCTCGGGGTAGTATATCCTTAGCCCTTCAGCCAGTGTGACTCCTGCAA
GAGCAGCATAGGACAGTGTAGGATGAGTGCCTTGACCCTGGATATGGCTGCATTCGGTAC
CTCAGTGAAGAAACGAAGGATGCTGGCCCACAGTGAGGAGGCAGGCATTTCTGAGAAACA
TTTGCAACAGTGTATTAGCATGTGTTTGGTTTGGGGTTTATTTTAAGCTAAACATGAAAA
CAAATTATAACTTAACAGCTCATGCAACACAGATTTAGTATTATTGTTTGATTATTATAG
AACACATTATGTTCCTAGTTTTAAAAAGACCCAAACTATGGTTTATATAATTTATTGGCA
TTTTTGCTGAATAGGTTTAAGTCAGGTAATAGATTTTTAAAAAGCAATGAAGCATTGTGT
CAAAATTTAATGTTTTCGTAATAAAAATAGATACTATGTTCACGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAGTTTTATTCCAGAGCATCTCAGAAACCCCAGCCAAACTTCCCCAGTCCAGAATAC
ATGATATTTGATCATGAGTTTACGAAGCTAGTAAAAGAACTTGAAGGTGTGATAACTAAA
GCTATCCATAAGTCCAGTGAAGAAGATAAAAAAGAAGAAGAAGTGAAAAAAACATTAGAA
CAGCATGACAGTATTGTGACTCACTACAAAAATATGATTCGAGAGCAAGATCTGCAACTT
GAGGAATTAAAGCAGCAGATTTCCACGTTAAAATGTCAAAACGAACAGCTCCAGACAGCA
GTCACACAGCAAGTATCTCAGATTCAGCAACACAAGGATCAGTATAATCTTCTTAAAGTA
CAGCTAGGAAAAGACAATCAGCCTCAAGGTTCTTACAATGATGGGTCTCAAATGAATGGC
ATTCAACCGGAAGAAATTGGTAGGTTGCGAGAAGAGATAGAAGAATTAAAAAGTAATCAG
GAACTTTTACAAAACCAGCTGGCTGAAAAGGACTCTTTGATTGAAAATTTGAAATCTTCC
CAACCATCACCTGGCGCAAATGAAGAGTCTTCAGCAACAGATTCAGCAAGAGATTCTGAA
CAAATAGCAGACTTGAAACAGGAACTGGCAACATTAAAGTCTCAGTTAAACTCACAATCT
ATAGAAATCACTAAACTACAGACGGAAAAGCAGGAGCTGTTACAGAAAACAGAAGCATTT
GCAAAATCAGTTCCTGAACCAGAACAGAGTGAAACTGTAACAGCTGCAAAAGCTACTGAT
GTAGAAGGAAGACTGTCAGCATTATTACAAGAGACTAAAGAATTAAAGAATGAAATTAAA
GCTCTGTCTGAAGAAAGAACTGCTATTAAAGAGCAGCTGGATGCATCTAACAGTACCATT
GCCATTTTACAAAATGAGAAAAACAAGCTCGAGGTGGACATTACAGATTCAAAAAAAGAA
CAAGATGATCTTTTGGTGCTGTTGGCTGATCAGGATCAGAAAATATTTTCATTAAAGAAT
AAACTCAAGGAACTTGGTCATCCAGTTGAAGAAGAGGATGAACTTGAATCTGGAGACCAA
GATGATGAGGATGATGAAGATGAAGATGATGGCAAGGAACAGGGTCATATCTAGCTTTAA
AATCTTTGGGAATGATAAGAAATTATATTGTATCTTTGAAGATGGAGTCTTAAGACAGTG
CTTTGGTTTGCCTCCACAGAAAATAAAGATTTAGAAACCAGGTGGAAAACATTCACTAAT
AAGACTATTGATGTATTTTTTAAATGATGCCACCCATGTTGCTAATTCTTTTAATCTAAC
TTTATGTAGAACACATATCTCTTATTGAAATTTATTTGAACTGTCCCAAAATATAATTTG
CAAAGAGCTACAGACACCAAAAATGTAACATTTTGAGGCACTTGGTGGCAATGCTATTTG
CCTTAGTTCATTGGTTGTGTATAGAAGTTCTGTATTTGTCTGCTATTTTTACTTTTCAGA
ATTTGTGTCTTTAAATACTAACACATTTGATTTAATGTGTGTTGGAATCATTGTTTCTAA
ATTCAATATTGAGTTCTTAGCTAATGATTTCCTTTTAAAGAAATGGATTTCCTTAAAGGC
AAGAGAGCAAGGTCTCGGGGTAGTATATCCTTAGCCCTTCAGCCAGTGTGACTCCTGCAA
GAGCAGCATAGGACAGTGTAGGATGAGTGCCTTGACCCTGGATATGGCTGCATTCGGTAC
CTCAGTGAAGAAACGAAGGATGCTGGCCCACAGTGAGGAGGCAGGCATTTCTGAGAAACA
TTTGCAACAGTGTATTAGCATGTGTTTGGTTTGGGGTTTATTTTAAGCTAAACATGAAAA
CAAATTATAACTTAACAGCTCATGCAACACAGATTTAGTATTATTGTTTGATTATTATAG
AACACATTATGTTCCTAGTTTTAAAAAGACCCAAACTATGGTTTATATAATTTATTGGCA
TTTTTGCTGAATAGGTTTAAGTCAGGTAATAGATTTTTAAAAAGCAATGAAGCATTGTGT
CAAAATTTAATGTTTTCGTAATAAAAATAGATACTATGTTCACGTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q99JZ5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q99JZ5_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1047-1832, gnl|bosTau2|chr23 (29635418-29636191)
               

               
               1047-1832, gnl|Hg17|chr4 (77091540-77092296)
               

               
               1047-1832, gnl|Mm7|chr5 (92189106-92189800)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1047-1832, gnl|bosTau2|chr23 (29635418-29636191)
               

               
               1047-1832, gnl|Hg17|chr4 (77091540-77092296)
               

               
               1047-1832, gnl|Mm7|chr5 (92189106-92189800)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               cmu (1.67754)
               

               
               sto (1.07894)
               

               
               lyg (1.06482)
               

               
               vin (0.997672)
               

               
               cte (0.87822)
               

               
               sag (0.730861)
               

               
               eye (0.682012)
               

               
               bfe (0.599431)
               

               
               gul (0.532765)
               

               
               rec (0.519211)
               

               
               ret (0.514933)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               spc (0.453463)
               

               
               isp (0.451128)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (1.67754)
               

               
               sto (1.07894)
               

               
               lyg (1.06482)
               

               
               vin (0.997672)
               

               
               cte (0.87822)
               

               
               sag (0.730861)
               

               
               eye (0.682012)
               

               
               bfe (0.599431)
               

               
               gul (0.532765)
               

               
               rec (0.519211)
               

               
               ret (0.514933)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               spc (0.453463)
               

               
               isp (0.451128)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1047-1832, gnl\|bosTau2\|chr23 (29635418-29636191)
	1047-1832, gnl\|Hg17\|chr4 (77091540-77092296)
	1047-1832, gnl\|Mm7\|chr5 (92189106-92189800)

	cmu (1.67754)
	sto (1.07894)
	lyg (1.06482)
	vin (0.997672)
	cte (0.87822)
	sag (0.730861)
	eye (0.682012)
	bfe (0.599431)
	gul (0.532765)
	rec (0.519211)
	ret (0.514933)
	cbe (0.478469)
	fco (0.471624)
	spc (0.453463)
	isp (0.451128)
	aor (0.390549)
	kid (0.389206)
	ski (0.29347)
	liv (0.292569)
	lin (0.291206)
	csk (0.281492)
	mgp (0.230681)
	mas (0.210305)
	mgm (0.180343)
	sin (0.174948)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	spl (0.143184)
	che (0.136314)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)