Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L09.5

Sequence:


               
               CTGACTAGTAATTTCTACGCTTTTTGGATTCAGAGCTCCTCACAAAAAGAAAAAATGAGG
GGGCGGGACAAGGTGAAACTATAACAACATCCCTTTGTGTACTGTTCCGCTGCTCACAGC
GTACTCTGGCATTACTTTCTCTCTCAGGATTCTCACGGTAGGACTTCTGAGATCTTAATC
AAGGAGTGCCAGCGTTGTCTCTGCCAGCAGAGGGGGTCTCTGCTTTGTCCATTGATGGCA
TAGCTGACACCAGAACCCCTGTACGGCTGACTACTAGTCAGAGGCACTTTACTCGTATCA
TGGAATGATTTGAAATCTTTGTAAAGCAGCAAAATCTGATAATGACTGCCAGCTTTCCTT
GTATACTCCAAGTATTCCGGAGAACCTGGATATAAGATTACTTTGAAGGAATAGATTAGG
ATTTGAAGACATTACAGTGTAGGGAATTTTATATTTGTGCAGTAACAAACATTAATCAAG
GCAAAACGTTGTAAAAGTAGTTTTAATTCACCTTAGGTTTTATTAGTGTCTTAATGCTTC
TAAATGAAGACAACTAAAAGGGGCACCAATTTTGTTTGGCTAAATCCTGACATCTAAAAA
TACAGATTTGTGGGCATCTTTTTCTATTCACATAAATTTATTGACTAAAATGAGATAATG
GGGAGGGGGAAGCAAGGTTCGATTAAATAAAATTTTCTCTGCATTGGTCTTTTCCCTATC
TTATCTAGATTTTCTTATTTTTCCTCACCATGCCTCCCACTTTTTGGGTGTTAATTTTAA
ACAGGGAAAGCTCGCTACATTACAAAGGATGTTGGCACCACTTATTTTACACAAAGGCTA
AAGGTTGACTTTTGGAAATGATGAGCTACTTTTCCATATGTGTTTACTTGTGCTTTGTGA
TATTTCTGGATCATTCCAGTCATAAAGACTTATTACATGTAATATTTCTTGCTACTTGTG
AAAAGGTGTATTTTTAAAGAATGTATAACCAACAATCCATTTACTTTTTATTAGTATGTA
GAGAATTTATTTGTATCTAATTCATGAATGTAGTTTTACTATAGGATGTCATTGTAAATG
GAGCAAAGTACATTATCTTTATAGTTATTCTAAAATGTACATTATGTAAGAATTGTAAAT
ATTACACCTGATTAAATACTTTGTATACTGAGAAATTATGTCAAGTCAATAAAATCTCAC
CTCTGGCACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTAGTAATTTCTACGCTTTTTGGATTCAGAGCTCCTCACAAAAAGAAAAAATGAGG
GGGCGGGACAAGGTGAAACTATAACAACATCCCTTTGTGTACTGTTCCGCTGCTCACAGC
GTACTCTGGCATTACTTTCTCTCTCAGGATTCTCACGGTAGGACTTCTGAGATCTTAATC
AAGGAGTGCCAGCGTTGTCTCTGCCAGCAGAGGGGGTCTCTGCTTTGTCCATTGATGGCA
TAGCTGACACCAGAACCCCTGTACGGCTGACTACTAGTCAGAGGCACTTTACTCGTATCA
TGGAATGATTTGAAATCTTTGTAAAGCAGCAAAATCTGATAATGACTGCCAGCTTTCCTT
GTATACTCCAAGTATTCCGGAGAACCTGGATATAAGATTACTTTGAAGGAATAGATTAGG
ATTTGAAGACATTACAGTGTAGGGAATTTTATATTTGTGCAGTAACAAACATTAATCAAG
GCAAAACGTTGTAAAAGTAGTTTTAATTCACCTTAGGTTTTATTAGTGTCTTAATGCTTC
TAAATGAAGACAACTAAAAGGGGCACCAATTTTGTTTGGCTAAATCCTGACATCTAAAAA
TACAGATTTGTGGGCATCTTTTTCTATTCACATAAATTTATTGACTAAAATGAGATAATG
GGGAGGGGGAAGCAAGGTTCGATTAAATAAAATTTTCTCTGCATTGGTCTTTTCCCTATC
TTATCTAGATTTTCTTATTTTTCCTCACCATGCCTCCCACTTTTTGGGTGTTAATTTTAA
ACAGGGAAAGCTCGCTACATTACAAAGGATGTTGGCACCACTTATTTTACACAAAGGCTA
AAGGTTGACTTTTGGAAATGATGAGCTACTTTTCCATATGTGTTTACTTGTGCTTTGTGA
TATTTCTGGATCATTCCAGTCATAAAGACTTATTACATGTAATATTTCTTGCTACTTGTG
AAAAGGTGTATTTTTAAAGAATGTATAACCAACAATCCATTTACTTTTTATTAGTATGTA
GAGAATTTATTTGTATCTAATTCATGAATGTAGTTTTACTATAGGATGTCATTGTAAATG
GAGCAAAGTACATTATCTTTATAGTTATTCTAAAATGTACATTATGTAAGAATTGTAAAT
ATTACACCTGATTAAATACTTTGTATACTGAGAAATTATGTCAAGTCAATAAAATCTCAC
CTCTGGCACAGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-362, gnl|bosTau2|chr1 (44324160-44323799)
               

               
               1-362, gnl|Hg17|chr3 (196477946-196477561)
               

               
               1-362, gnl|Mm7|chr16 (30767575-30767260)
               


               
               365-1208, gnl|bosTau2|chr1 (44323775-44322935)
               

               
               365-1208, gnl|Hg17|chr3 (196477545-196476773)
               

               
               365-1208, gnl|Mm7|chr16 (30767247-30766444)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr1 (44324160-44323799)
               

               
               1-362, gnl|Hg17|chr3 (196477946-196477561)
               

               
               1-362, gnl|Mm7|chr16 (30767575-30767260)
               


               
               365-1208, gnl|bosTau2|chr1 (44323775-44322935)
               

               
               365-1208, gnl|Hg17|chr3 (196477545-196476773)
               

               
               365-1208, gnl|Mm7|chr16 (30767247-30766444)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               bfe (0.299715)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-362, gnl\|bosTau2\|chr1 (44324160-44323799)
	1-362, gnl\|Hg17\|chr3 (196477946-196477561)
	1-362, gnl\|Mm7\|chr16 (30767575-30767260)

	365-1208, gnl\|bosTau2\|chr1 (44323775-44322935)
	365-1208, gnl\|Hg17\|chr3 (196477545-196476773)
	365-1208, gnl\|Mm7\|chr16 (30767247-30766444)

	bfe (0.299715)
	nlu (0.191681)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	fco (0.157208)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)