Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L19.3

Sequence:


               
               TCTGAAGAAGACCTTCAGCCGTGCCCTGGCGGATCCGACAGGCCCTCGTAGCGGAGCCGA
CAGGCCCTCGGGTAGGAGATATGTGTAACACACCAACTTACTGTGATCTAGGAAAGGCTG
CCAAGGATGTCTTCAACAAAGGATATGGGTTTGGCATGGTCAAAATAGATCTGAGAACCA
AGTCATGTAGTGGAGTGGAATTTTCTACTTCGGGTCATGCTTACACGGATACAGGGAAAG
CATCAGGCAACCTGGAGACCAAATACAAGATCTGTGACTATGGACTGACCTTTACCCAAA
AGTGGAACACAGACAATACTCTTGGGACAGAAATCTCTTTGGAGAATAAGTTGGCTGAAG
GGTTGAAACTGACTCTTGATACCATATTTGTACCAAACACAGGGAAGAAGAGTGGGAAAT
TGAAGGCCTCCTATAAACGAGAATGTTTCAGTATTGGCAGTAATGTTGATATAGATTTTG
CTGGACCAACCATCTATGGCTGGGCCGTGCTGGCCCTTGAAGGCTGGCTTGCTGGCTATC
AGATGAGTTTTGACACAGCCAAATCCAAACTGTCACAGAATAATTTTGCTCTGGGTTACA
AGGCCGCGGACTTCCAGCTGCACACTCATGTGAATGATGGCACTGAGTTTGGAGGGTCGA
TCTACCAGAAAGTGAATGAGAAGATTGAAACGTCAATAAACCTCGCATGGACGGCCGGCA
GTAACAACACCCGTTTTGGCATTGCTGCTAAGTATAAGCTGGATTGTAGAACTTCTCTAT
CTGCTAAAGTAAATAATGCCAGCCTAATTGGATTGGGTTATACTCAGACCCTTCGACCAG
GAGTCAAACTGACCCTATCAGCTCTAATCGATGGAAAGAACTTCAGTGCAGGAGGTCACA
AGGTTGGGCTGGGATTTGAACTAGAAGCTTAATGTGGTTTTGCGTAAAGCATCAGCTTTG
TTCCTGGAGGTGAAGAGAAACGAACCCACTATGTTTTGGCCTTAAAATTCTTCTGTGAAA
TTTCAAACGTGTGAACTTTTTATTCTTCCAAAGAATTGTAATCCTCCCCACACTGAAGCC
TAGGTATCGAGTCATCCTGAGGGAGGTGCTTGAAGGCATGCCTGGAAGTTGTCATGTTCG
TGCCATGTTTCAGTTCAGTTCCACAGTGTTATTTTAAATGTGTTCCTCAGCCACGGTGTA
GTGTCATGTTCCAAAGGAGATGACCCGGCCCTCCAGGTGTACGTCACGTCCTGCATGTCC
CACACCACTTGTTCATGGCCTTGGCATATATGGTCTCTGTGCAGTAGTGGAATCTTTGGT
TTTGCATCAGAGTAAAATAAAATAAACCCATCACATTTGGAACATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAAGAAGACCTTCAGCCGTGCCCTGGCGGATCCGACAGGCCCTCGTAGCGGAGCCGA
CAGGCCCTCGGGTAGGAGATATGTGTAACACACCAACTTACTGTGATCTAGGAAAGGCTG
CCAAGGATGTCTTCAACAAAGGATATGGGTTTGGCATGGTCAAAATAGATCTGAGAACCA
AGTCATGTAGTGGAGTGGAATTTTCTACTTCGGGTCATGCTTACACGGATACAGGGAAAG
CATCAGGCAACCTGGAGACCAAATACAAGATCTGTGACTATGGACTGACCTTTACCCAAA
AGTGGAACACAGACAATACTCTTGGGACAGAAATCTCTTTGGAGAATAAGTTGGCTGAAG
GGTTGAAACTGACTCTTGATACCATATTTGTACCAAACACAGGGAAGAAGAGTGGGAAAT
TGAAGGCCTCCTATAAACGAGAATGTTTCAGTATTGGCAGTAATGTTGATATAGATTTTG
CTGGACCAACCATCTATGGCTGGGCCGTGCTGGCCCTTGAAGGCTGGCTTGCTGGCTATC
AGATGAGTTTTGACACAGCCAAATCCAAACTGTCACAGAATAATTTTGCTCTGGGTTACA
AGGCCGCGGACTTCCAGCTGCACACTCATGTGAATGATGGCACTGAGTTTGGAGGGTCGA
TCTACCAGAAAGTGAATGAGAAGATTGAAACGTCAATAAACCTCGCATGGACGGCCGGCA
GTAACAACACCCGTTTTGGCATTGCTGCTAAGTATAAGCTGGATTGTAGAACTTCTCTAT
CTGCTAAAGTAAATAATGCCAGCCTAATTGGATTGGGTTATACTCAGACCCTTCGACCAG
GAGTCAAACTGACCCTATCAGCTCTAATCGATGGAAAGAACTTCAGTGCAGGAGGTCACA
AGGTTGGGCTGGGATTTGAACTAGAAGCTTAATGTGGTTTTGCGTAAAGCATCAGCTTTG
TTCCTGGAGGTGAAGAGAAACGAACCCACTATGTTTTGGCCTTAAAATTCTTCTGTGAAA
TTTCAAACGTGTGAACTTTTTATTCTTCCAAAGAATTGTAATCCTCCCCACACTGAAGCC
TAGGTATCGAGTCATCCTGAGGGAGGTGCTTGAAGGCATGCCTGGAAGTTGTCATGTTCG
TGCCATGTTTCAGTTCAGTTCCACAGTGTTATTTTAAATGTGTTCCTCAGCCACGGTGTA
GTGTCATGTTCCAAAGGAGATGACCCGGCCCTCCAGGTGTACGTCACGTCCTGCATGTCC
CACACCACTTGTTCATGGCCTTGGCATATATGGTCTCTGTGCAGTAGTGGAATCTTTGGT
TTTGCATCAGAGTAAAATAAAATAAACCCATCACATTTGGAACATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47523786|ref|NP_999529.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523786|ref|NP_999529.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               212-331, - strand, RNAz p=0.566941
               

               
               412-571, - strand, RNAz p=0.706822
               

               
               652-771, - strand, RNAz p=0.755659

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-331, - strand, RNAz p=0.566941
               

               
               412-571, - strand, RNAz p=0.706822
               

               
               652-771, - strand, RNAz p=0.755659

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1368, gnl|bosTau2|chr10 (13353068-13351713)
               

               
               13-1368, gnl|Hg17|chr14 (99500616-99501905)
               

               
               13-1368, gnl|Mm7|chr13 (17397431-17396127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1368, gnl|bosTau2|chr10 (13353068-13351713)
               

               
               13-1368, gnl|Hg17|chr14 (99500616-99501905)
               

               
               13-1368, gnl|Mm7|chr13 (17397431-17396127)

Expressed library(ies): 57 entry(ies)

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Expressed library(ies): 57 entry(ies)

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               ssp (1.89728)
               

               
               ste (1.48729)
               

               
               tes (1.4547)
               

               
               sme (1.22175)
               

               
               cte (1.17096)
               

               
               tbr (0.925069)
               

               
               hea (0.817996)
               

               
               fbs (0.701385)
               

               
               ldo (0.679018)
               

               
               mas (0.630915)
               

               
               eep (0.61282)
               

               
               hlv (0.557025)
               

               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (1.89728)
               

               
               ste (1.48729)
               

               
               tes (1.4547)
               

               
               sme (1.22175)
               

               
               cte (1.17096)
               

               
               tbr (0.925069)
               

               
               hea (0.817996)
               

               
               fbs (0.701385)
               

               
               ldo (0.679018)
               

               
               mas (0.630915)
               

               
               eep (0.61282)
               

               
               hlv (0.557025)
               

               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               sug (0.381874)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	212-331, - strand, RNAz p=0.566941
	412-571, - strand, RNAz p=0.706822
	652-771, - strand, RNAz p=0.755659

	13-1368, gnl\|bosTau2\|chr10 (13353068-13351713)
	13-1368, gnl\|Hg17\|chr14 (99500616-99501905)
	13-1368, gnl\|Mm7\|chr13 (17397431-17396127)

	ssp (1.89728)
	ste (1.48729)
	tes (1.4547)
	sme (1.22175)
	cte (1.17096)
	tbr (0.925069)
	hea (0.817996)
	fbs (0.701385)
	ldo (0.679018)
	mas (0.630915)
	eep (0.61282)
	hlv (0.557025)
	nco (0.485201)
	ece (0.45861)
	sug (0.381874)
	ebs (0.354904)
	ton (0.351)
	sin (0.349895)
	duo (0.345602)
	spc (0.340097)
	vin (0.332557)
	cty (0.31224)
	isp (0.300752)
	bfe (0.299715)
	che (0.272628)
	fce (0.271592)
	ese (0.253004)
	pgl (0.236967)
	jca (0.22792)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	ctl (0.153069)
	eli (0.151814)
	cag (0.151194)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	nbm (0.0993246)