Ss1.1-Pig4-TMW8038L20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCGGTGTAGTGGGCAGGACAGGAGCTGGGAAGTCATCCCTGACCAACAGCCTCTTCAG AATCCTAGAGGCTGCAGGAGGCCAGATCACCATCGATGGGGTGGATATTGCTTCCATTGG GCTCCACGACCTCCGAGAGAAGCTGACCATCATCCCCCAGGATCCCATCCTGTTCTCTGG GACCCTGAGAATGAATCTCGACCCTTTCAACAGCTACTCAGATGAGGAGCTTTGGAAGGC CTTGGAGCTGGCTCACCTCAAGTCCTTTGTGTCTCACCTGCAACTTGGGTTGTCCTACGA GGTGACAGAGGGCGGTGACAACCTGAGCATAGGACAGAGACAGCTACTCTGCCTGGCCAG GGCTCTGCTTCGGAAATCCAAGATCCTGATCATGGATGAAGCCACTGCTGCGGTGGATCT AGAGACAGATCACCTCATCCAGACGACCATCCAAACTGAGTTCTCCCACTGCACCACCAT CACCATTGCCCACCGACTGCACACCATCATGGACAGTGACAAGGTAATGGTCCTAGACAA TGGGAATATTGTACAGTATGACAGCCCCGAAGAACTGTTGAAAACCCCTGGCCCCTTTTA TTATATGGCCCAAGAAGCTGGCATTGAAAATACACACAGCACAGCCTTCTGAGAGCAAGT CTGACAGGTTAGAGAAGGGCTGTGAGGACCATTCCGTATTCTTTTTGTGACGTATACGAA CAAGTATACATACAAAAAGCGTGCGTAAAATATGTTTTAAAGGATCATAAGTGAACACCC ATGTCCCCATTATCCAAGATTTTTCCGAAATGAGTATTATCAGCTGCATCATGATTCCAC TGTGATCCTATACCTCCCGGCTTCTCTCCCTCAAGAGAGAACTGCTATCCTGGATTTTGT GATTATTATTCCTTTGCTTTCTGTTTTCGTTTTACAACTTCCCTTAAAAATGGACCTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCGGTGTAGTGGGCAGGACAGGAGCTGGGAAGTCATCCCTGACCAACAGCCTCTTCAG AATCCTAGAGGCTGCAGGAGGCCAGATCACCATCGATGGGGTGGATATTGCTTCCATTGG GCTCCACGACCTCCGAGAGAAGCTGACCATCATCCCCCAGGATCCCATCCTGTTCTCTGG GACCCTGAGAATGAATCTCGACCCTTTCAACAGCTACTCAGATGAGGAGCTTTGGAAGGC CTTGGAGCTGGCTCACCTCAAGTCCTTTGTGTCTCACCTGCAACTTGGGTTGTCCTACGA GGTGACAGAGGGCGGTGACAACCTGAGCATAGGACAGAGACAGCTACTCTGCCTGGCCAG GGCTCTGCTTCGGAAATCCAAGATCCTGATCATGGATGAAGCCACTGCTGCGGTGGATCT AGAGACAGATCACCTCATCCAGACGACCATCCAAACTGAGTTCTCCCACTGCACCACCAT CACCATTGCCCACCGACTGCACACCATCATGGACAGTGACAAGGTAATGGTCCTAGACAA TGGGAATATTGTACAGTATGACAGCCCCGAAGAACTGTTGAAAACCCCTGGCCCCTTTTA TTATATGGCCCAAGAAGCTGGCATTGAAAATACACACAGCACAGCCTTCTGAGAGCAAGT CTGACAGGTTAGAGAAGGGCTGTGAGGACCATTCCGTATTCTTTTTGTGACGTATACGAA CAAGTATACATACAAAAAGCGTGCGTAAAATATGTTTTAAAGGATCATAAGTGAACACCC ATGTCCCCATTATCCAAGATTTTTCCGAAATGAGTATTATCAGCTGCATCATGATTCCAC TGTGATCCTATACCTCCCGGCTTCTCTCCCTCAAGAGAGAACTGCTATCCTGGATTTTGT GATTATTATTCCTTTGCTTTCTGTTTTCGTTTTACAACTTCCCTTAAAAATGGACCTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 332-450, - strand, RNAz p=0.760776 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 332-450, - strand, RNAz p=0.760776 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 155-327, gnl|bosTau2|chr19 (27900263-27900435) | |
| 155-327, gnl|canFam2|chr9 (29913966-29914175) | |
| 155-327, gnl|danRer3|chr3 (32431874-32432051) | |
| 155-327, gnl|dasNov1|scaffold_95450 (6609-6389) | |
| 155-327, gnl|echTel1|scaffold_37991 (4389-4593) | |
| 155-327, gnl|fr1|chrUn (261624236-261624447) | |
| 155-327, gnl|galGal2|chr3_random (855095-854912) | |
| 155-327, gnl|hg17|chr17 (46117038-46117245) | |
| 155-327, gnl|Hg17|chr17 (46117063-46117235) | |
| 155-327, gnl|loxAfr1|scaffold_10464 (69848-69641) | |
| 155-327, gnl|mm7|chr11 (94460172-94459968) | |
| 155-327, gnl|Mm7|chr11 (94460147-94459975) | |
| 155-327, gnl|monDom2|scaffold_124 (2889836-2889627) | |
| 155-327, gnl|oryCun1|scaffold_213401 (178155-178362) | |
| 155-327, gnl|panTro1|chr19_random (31755408-31755615) | |
| 155-327, gnl|rheMac2|chr16 (34929075-34929282) | |
| 155-327, gnl|rn3|chr10 (83005496-83005292) | |
| 155-327, gnl|tetNig1|chrUn_random (22912634-22912809) | |
| 155-327, gnl|xenTro1|scaffold_135 (1076329-1076159) | |
| 332-537, gnl|bosTau2|chr19 (27905171-27905374) | |
| 332-537, gnl|canFam2|chr9 (29916817-29917039) | |
| 332-537, gnl|danRer3|chr3 (32432124-32432336) | |
| 332-537, gnl|dasNov1|scaffold_95450 (3398-3176) | |
| 332-537, gnl|echTel1|scaffold_310063 (43025-43249) | |
| 332-537, gnl|fr1|chrUn (261624506-261624709) | |
| 332-537, gnl|galGal2|chr3_random (854036-853815) | |
| 332-537, gnl|hg17|chr17 (46119875-46120098) | |
| 332-537, gnl|Hg17|chr17 (46119900-46120103) | |
| 332-537, gnl|loxAfr1|scaffold_10464 (66581-66358) | |
| 332-537, gnl|mm7|chr11 (94455200-94454980) | |
| 332-537, gnl|Mm7|chr11 (94455176-94454974) | |
| 332-537, gnl|monDom2|scaffold_124 (2886252-2886030) | |
| 332-537, gnl|oryCun1|scaffold_206345 (58892-59115) | |
| 332-537, gnl|panTro1|chr19_random (31758284-31758507) | |
| 332-537, gnl|rheMac2|chr16 (34931934-34932157) | |
| 332-537, gnl|rn3|chr10 (453393-453178) | |
| 332-537, gnl|tetNig1|chrUn_random (22912877-22913094) | |
| 332-537, gnl|xenTro1|scaffold_135 (1075251-1075035) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 155-327, gnl|bosTau2|chr19 (27900263-27900435) | |
| 155-327, gnl|canFam2|chr9 (29913966-29914175) | |
| 155-327, gnl|danRer3|chr3 (32431874-32432051) | |
| 155-327, gnl|dasNov1|scaffold_95450 (6609-6389) | |
| 155-327, gnl|echTel1|scaffold_37991 (4389-4593) | |
| 155-327, gnl|fr1|chrUn (261624236-261624447) | |
| 155-327, gnl|galGal2|chr3_random (855095-854912) | |
| 155-327, gnl|hg17|chr17 (46117038-46117245) | |
| 155-327, gnl|Hg17|chr17 (46117063-46117235) | |
| 155-327, gnl|loxAfr1|scaffold_10464 (69848-69641) | |
| 155-327, gnl|mm7|chr11 (94460172-94459968) | |
| 155-327, gnl|Mm7|chr11 (94460147-94459975) | |
| 155-327, gnl|monDom2|scaffold_124 (2889836-2889627) | |
| 155-327, gnl|oryCun1|scaffold_213401 (178155-178362) | |
| 155-327, gnl|panTro1|chr19_random (31755408-31755615) | |
| 155-327, gnl|rheMac2|chr16 (34929075-34929282) | |
| 155-327, gnl|rn3|chr10 (83005496-83005292) | |
| 155-327, gnl|tetNig1|chrUn_random (22912634-22912809) | |
| 155-327, gnl|xenTro1|scaffold_135 (1076329-1076159) | |
| 332-537, gnl|bosTau2|chr19 (27905171-27905374) | |
| 332-537, gnl|canFam2|chr9 (29916817-29917039) | |
| 332-537, gnl|danRer3|chr3 (32432124-32432336) | |
| 332-537, gnl|dasNov1|scaffold_95450 (3398-3176) | |
| 332-537, gnl|echTel1|scaffold_310063 (43025-43249) | |
| 332-537, gnl|fr1|chrUn (261624506-261624709) | |
| 332-537, gnl|galGal2|chr3_random (854036-853815) | |
| 332-537, gnl|hg17|chr17 (46119875-46120098) | |
| 332-537, gnl|Hg17|chr17 (46119900-46120103) | |
| 332-537, gnl|loxAfr1|scaffold_10464 (66581-66358) | |
| 332-537, gnl|mm7|chr11 (94455200-94454980) | |
| 332-537, gnl|Mm7|chr11 (94455176-94454974) | |
| 332-537, gnl|monDom2|scaffold_124 (2886252-2886030) | |
| 332-537, gnl|oryCun1|scaffold_206345 (58892-59115) | |
| 332-537, gnl|panTro1|chr19_random (31758284-31758507) | |
| 332-537, gnl|rheMac2|chr16 (34931934-34932157) | |
| 332-537, gnl|rn3|chr10 (453393-453178) | |
| 332-537, gnl|tetNig1|chrUn_random (22912877-22913094) | |
| 332-537, gnl|xenTro1|scaffold_135 (1075251-1075035) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| lun (0.150489) | |
| jej (0.0989218) |