Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L21.3

Sequence:


               
               TTGCCTCTTCAGTGAACTGTGGCTTTTTTTTTATTGCATTTCTTTGGTCCTTGTGGTGGC
CCTTCTGACTTTTCAGAGAACACCCTTCTTGTTGGAGGCAGATGTAAGTGTCGCTTCTGC
TTTGCCACATGCATTACTGAGACAATCATATCTTCCTGAGCTTTTTAAGGAAAGTTGGAA
AGAAAAAAAAAAGTAGAACTAGCTATAAAATATGTATGGCACCTCTTGTTTAATTTTGCA
TGCAACTTCTTTTTCGTGCATTAATGAGGTTTTAGTGACATTGTCATCTAACACTTTACC
TTCATTGTTCAGGGAATGCCTTCATGATTTTTGTACTGGTTTTACTATTCAGAGAATGGC
TTGGGTGTGAGGATACTGTTATCAACCACCTGGTCTTTTAATTACCCATCCCAGTAAGCG
CTTATTTTGTGAAGCCTTATGTTTCTCAGATTCAGACACTGTTAGAACCTTAATATAGTA
GTTGATGGGTATCTGTGAATTTTTTTTTTTTTTTTTTTTTTTTTACTTGAAGTAGATTGT
CTAAATTAGGCATCCTCATCTGCATTATCCGGGACCTCGCTCACTGTCATGTGCACTACA
AGTCGCAATTTGGAAAACTGTGTCGCAATCCTGTTGGTTCATGGTTCTTGAAGACCGACG
GTCTTTCCCAAAACACTGGCGACTGCAGCAGCATTTTTAATGTGTAAAAGGCCACTGAGG
CCAAAGATTTTTTTAAAATCATTGTACAAATTCTGATGTTAAACTATTAAGCTTTGCTGT
AATACTGTTTTCTCTTCAATATGTGATGGTACAGGAACGAGGTTAAATGAAGGGGTCGTA
TTGCAGGGGAGCATTTTAAATCACAGAAGTAAAAAAATTATAATATTTATAATTTTGATG
AATTTAAGTTTATTTTTATGGGGAAGAGTTTTCTTCTCTAAAATTGTTTCTGGAATGGCA
AATTGTTTCCATTATTAAAAGTTGAAGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCTCTTCAGTGAACTGTGGCTTTTTTTTTATTGCATTTCTTTGGTCCTTGTGGTGGC
CCTTCTGACTTTTCAGAGAACACCCTTCTTGTTGGAGGCAGATGTAAGTGTCGCTTCTGC
TTTGCCACATGCATTACTGAGACAATCATATCTTCCTGAGCTTTTTAAGGAAAGTTGGAA
AGAAAAAAAAAAGTAGAACTAGCTATAAAATATGTATGGCACCTCTTGTTTAATTTTGCA
TGCAACTTCTTTTTCGTGCATTAATGAGGTTTTAGTGACATTGTCATCTAACACTTTACC
TTCATTGTTCAGGGAATGCCTTCATGATTTTTGTACTGGTTTTACTATTCAGAGAATGGC
TTGGGTGTGAGGATACTGTTATCAACCACCTGGTCTTTTAATTACCCATCCCAGTAAGCG
CTTATTTTGTGAAGCCTTATGTTTCTCAGATTCAGACACTGTTAGAACCTTAATATAGTA
GTTGATGGGTATCTGTGAATTTTTTTTTTTTTTTTTTTTTTTTTACTTGAAGTAGATTGT
CTAAATTAGGCATCCTCATCTGCATTATCCGGGACCTCGCTCACTGTCATGTGCACTACA
AGTCGCAATTTGGAAAACTGTGTCGCAATCCTGTTGGTTCATGGTTCTTGAAGACCGACG
GTCTTTCCCAAAACACTGGCGACTGCAGCAGCATTTTTAATGTGTAAAAGGCCACTGAGG
CCAAAGATTTTTTTAAAATCATTGTACAAATTCTGATGTTAAACTATTAAGCTTTGCTGT
AATACTGTTTTCTCTTCAATATGTGATGGTACAGGAACGAGGTTAAATGAAGGGGTCGTA
TTGCAGGGGAGCATTTTAAATCACAGAAGTAAAAAAATTATAATATTTATAATTTTGATG
AATTTAAGTTTATTTTTATGGGGAAGAGTTTTCTTCTCTAAAATTGTTTCTGGAATGGCA
AATTGTTTCCATTATTAAAAGTTGAAGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               825-943, + strand, RNAz p=0.627574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               825-943, + strand, RNAz p=0.627574

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               408-781, gnl|bosTau2|chr6 (53023240-53022879)
               

               
               408-781, gnl|Hg17|chr12 (63377018-63377399)
               


               
               825-1006, gnl|bosTau2|chr10 (51317935-51318114)
               

               
               825-1006, gnl|Hg17|chr12 (63377458-63377612)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               408-781, gnl|bosTau2|chr6 (53023240-53022879)
               

               
               408-781, gnl|Hg17|chr12 (63377018-63377399)
               


               
               825-1006, gnl|bosTau2|chr10 (51317935-51318114)
               

               
               825-1006, gnl|Hg17|chr12 (63377458-63377612)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               aor (0.781097)
               

               
               bla (0.497389)
               

               
               ssp (0.406559)
               

               
               nlu (0.383362)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               bla (0.497389)
               

               
               ssp (0.406559)
               

               
               nlu (0.383362)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	408-781, gnl\|bosTau2\|chr6 (53023240-53022879)
	408-781, gnl\|Hg17\|chr12 (63377018-63377399)

	825-1006, gnl\|bosTau2\|chr10 (51317935-51318114)
	825-1006, gnl\|Hg17\|chr12 (63377458-63377612)

	aor (0.781097)
	bla (0.497389)
	ssp (0.406559)
	nlu (0.383362)
	spl (0.286369)
	ova (0.258264)
	ese (0.253004)
	mgp (0.230681)
	cbl (0.229595)
	ece (0.229305)
	nms (0.213858)
	jej (0.197844)
	fcc (0.197785)
	mgm (0.180343)
	rec (0.17307)
	duo (0.172801)
	csp (0.161186)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	csk (0.140746)
	pla (0.133672)
	lyg (0.133103)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)