Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L23.3

Sequence:


               
               TTTTTTTTTTTTGCTTTTTTTTTTTTAATAAAGTGGCATCAATTGCTAAAAGCATTATGA
CGTTTGTTATGCTACATAATACTGATACAAAAATGTGAATAGTACAAAGTTCATTATATA
TAATATAAGGTTTTAATATATTACATTTGTTTCTACATAAACAGACTATAAATATATGTG
CCATAGCATGTTTTATAGTCATGGGTCCCAGCATCTCACACTATGGTACCAAATGAAAAA
ATACATTTTCTTTTTTAAAAAGGAAAGAAGAAGGGCAGAAACCATTAGAAAGAGGTTTAT
ATGTTAAAAGTCTAAATGATATCATAGATGTTGTTATAACTTTGGCTACAAGATAATTTT
GAAAACTGGCTAAAAATTACTCAGCACATGAACAAACCAAATCCGCTTTTACTATGATGT
AGAGGCCAAATTACTAGAATACTGACTGGCTGGGGGAGTCAGTATATACTGAAGGGAGGG
GGAGACGCGGAGGGGAGAAGGAGCAGGAGAGGAAAATCCTTCCTGAGGCTTTGACACCAC
AGCGTGATACTCAGCCTTACTGTCTTTGGGCCCAGACACATCACATCAGGACAGATATGT
GGGTACTCAGCCAGAAGAAACCAGAAATTGGTTTATCCAGTCAGAAATCTTTGATGCGAC
AGGGAGCCTCCATCTGAATGTCCTTTCCCTGCAGTGTCCTGAATAAAGGATCAGCCTGGG
AGACAAGGAGCCAAAGCTGCATCATTTCCTTCCTGGGGCTTGGCCAGGAGACACGTAAGA
GTCCGGAAGGAACTCTCATTAGGAGTCGGAAACAGCACAAGGAACTCTCATTTAGCCCAA
ATGGGAAGAACACGCAACCTTCTAAAACCAGTCATCTCAAGCTTTTACGTTTCCTAAGAG
ACCCCGTGCCCACCTCCCCCAGAGCCAACACAAAGCATGTGCAGTCTCCGGGGCGCCCTC
AGAGCAGGCCAGTGTCTTCCTTTCCATCAGTCCAAGCTCCACAAGGAAGACTTGGCTCAG
GACCCACATCCTAAACAAAGCTTCTTAGGCAGACTCAGCCCTAAAGGTCTTTCCCGTCTT
CAACACCTAAAGCACTTCCATCGCCTGGCTTCTCTTCTAGTTTTACAGAGGTGTCAGCTC
CCCAGGCACTGCTACTTCTTGGAGGATGAAGCCATTTCTTGAATTGCTTTTGCCGTAACC
CACGGGGTGACCCTCAGCAGGGGGCATCATACATGCTTGTTAAATGAATGAAAAAAAAAA
GAATAAGGTCAACACTGGGAGAAGACACAAACACATTCTTGGGTCACAAGCATCTTCTCA
GGAAATGCCTAGGGGACTGGCTCCCTGCAGTCCGAGGTCCTTTTTTTGAAATGACAATCA
AATGTGGCTACTTCCTGGCGGTGGAAAGAACAACACTTGAAAATCTGAGCAGCACCTCTC
ATGTGATTTCCAGGACAGGGGGGACGTGGGTGGCTCCTTTAAACAGGAGGAGAGCTCAGT
GTGGTCCCAGAGTCAGGCTGCAGGATCTGAGCTGCACTGCCAGCCTGCGGCCCCATCTCC
ATCAGCCTTAAAAGTTCCGCCTCCTCGCTGGAGTACACGGTGGTGTCCGTGTCGTCCGAG
TGATACCCAGACTGGTAGCCACTCGTCTGGTTGGAGCCTTCAGATGCCACAGACTCCTTG
CTTTTGCTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGCTTTTTTTTTTTTAATAAAGTGGCATCAATTGCTAAAAGCATTATGA
CGTTTGTTATGCTACATAATACTGATACAAAAATGTGAATAGTACAAAGTTCATTATATA
TAATATAAGGTTTTAATATATTACATTTGTTTCTACATAAACAGACTATAAATATATGTG
CCATAGCATGTTTTATAGTCATGGGTCCCAGCATCTCACACTATGGTACCAAATGAAAAA
ATACATTTTCTTTTTTAAAAAGGAAAGAAGAAGGGCAGAAACCATTAGAAAGAGGTTTAT
ATGTTAAAAGTCTAAATGATATCATAGATGTTGTTATAACTTTGGCTACAAGATAATTTT
GAAAACTGGCTAAAAATTACTCAGCACATGAACAAACCAAATCCGCTTTTACTATGATGT
AGAGGCCAAATTACTAGAATACTGACTGGCTGGGGGAGTCAGTATATACTGAAGGGAGGG
GGAGACGCGGAGGGGAGAAGGAGCAGGAGAGGAAAATCCTTCCTGAGGCTTTGACACCAC
AGCGTGATACTCAGCCTTACTGTCTTTGGGCCCAGACACATCACATCAGGACAGATATGT
GGGTACTCAGCCAGAAGAAACCAGAAATTGGTTTATCCAGTCAGAAATCTTTGATGCGAC
AGGGAGCCTCCATCTGAATGTCCTTTCCCTGCAGTGTCCTGAATAAAGGATCAGCCTGGG
AGACAAGGAGCCAAAGCTGCATCATTTCCTTCCTGGGGCTTGGCCAGGAGACACGTAAGA
GTCCGGAAGGAACTCTCATTAGGAGTCGGAAACAGCACAAGGAACTCTCATTTAGCCCAA
ATGGGAAGAACACGCAACCTTCTAAAACCAGTCATCTCAAGCTTTTACGTTTCCTAAGAG
ACCCCGTGCCCACCTCCCCCAGAGCCAACACAAAGCATGTGCAGTCTCCGGGGCGCCCTC
AGAGCAGGCCAGTGTCTTCCTTTCCATCAGTCCAAGCTCCACAAGGAAGACTTGGCTCAG
GACCCACATCCTAAACAAAGCTTCTTAGGCAGACTCAGCCCTAAAGGTCTTTCCCGTCTT
CAACACCTAAAGCACTTCCATCGCCTGGCTTCTCTTCTAGTTTTACAGAGGTGTCAGCTC
CCCAGGCACTGCTACTTCTTGGAGGATGAAGCCATTTCTTGAATTGCTTTTGCCGTAACC
CACGGGGTGACCCTCAGCAGGGGGCATCATACATGCTTGTTAAATGAATGAAAAAAAAAA
GAATAAGGTCAACACTGGGAGAAGACACAAACACATTCTTGGGTCACAAGCATCTTCTCA
GGAAATGCCTAGGGGACTGGCTCCCTGCAGTCCGAGGTCCTTTTTTTGAAATGACAATCA
AATGTGGCTACTTCCTGGCGGTGGAAAGAACAACACTTGAAAATCTGAGCAGCACCTCTC
ATGTGATTTCCAGGACAGGGGGGACGTGGGTGGCTCCTTTAAACAGGAGGAGAGCTCAGT
GTGGTCCCAGAGTCAGGCTGCAGGATCTGAGCTGCACTGCCAGCCTGCGGCCCCATCTCC
ATCAGCCTTAAAAGTTCCGCCTCCTCGCTGGAGTACACGGTGGTGTCCGTGTCGTCCGAG
TGATACCCAGACTGGTAGCCACTCGTCTGGTTGGAGCCTTCAGATGCCACAGACTCCTTG
CTTTTGCTGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46397994|gb|AAS91744.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46397994|gb|AAS91744.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1454-1562, - strand, RNAz p=0.781386

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1454-1562, - strand, RNAz p=0.781386

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002253, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002253, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1692, gnl|bosTau2|chr6 (35799026-35797328)
               

               
               7-1692, gnl|Hg17|chr4 (55785582-55787249)
               

               
               7-1692, gnl|Mm7|chr5 (75351275-75352862)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1692, gnl|bosTau2|chr6 (35799026-35797328)
               

               
               7-1692, gnl|Hg17|chr4 (55785582-55787249)
               

               
               7-1692, gnl|Mm7|chr5 (75351275-75352862)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               eye (0.511509)
               

               
               cty (0.41632)
               

               
               tra (0.246184)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               cty (0.41632)
               

               
               tra (0.246184)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	7-1692, gnl\|bosTau2\|chr6 (35799026-35797328)
	7-1692, gnl\|Hg17\|chr4 (55785582-55787249)
	7-1692, gnl\|Mm7\|chr5 (75351275-75352862)

	eye (0.511509)
	cty (0.41632)
	tra (0.246184)
	nms (0.213858)
	hea (0.204499)
	fli (0.202881)
	nep (0.183925)
	gul (0.177588)
	fbs (0.175346)
	nco (0.161734)
	cli (0.152812)
	liv (0.146284)
	spl (0.143184)
	pty (0.142714)
	cly (0.120642)
	ldo (0.0970026)