Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M02.5

Sequence:


               
               AAAGACAATGATTGGTTTTCCCTTGAGAAATGTTTTGCAGTGTCTGATGAAACTCTAGAT
TATGCCATATTAAAACTAAGCAAAAATGGACATAGATTTCCTCCAGGCCTGTTTCAACAT
GTTTCCCCTCAACCATCAGGTGGTTTGATTTATTTAATTGGTCACCCAGAAGGCCAGATC
AAGAAAATAGATGGTTGTATGGTGATTCCTCTGGAGCAACGGTTAGAGAGTTACCCAGAA
AATCATCGAGATAGGGTGGCAGGAACCCATGCTCCCATTTATAATGCTTGTCCTGTGCTT
ACCCAAAGAAGTTTCCTGACAGAGGCTTGGAGCCGTGAAACACTTAGTTATGATACTTGC
TTCTCCAGTGGGTCCTCTGGCTCCCCAGTGTTTAATGCATCTGGCCGTTTGGTTGCTATG
CACTCCTTTGGGCATTTTTATAGACATGAAAATAAGGTTTATGCTCTTATTGAATTTGGC
TATTCTATGGATTCAATTCTTAGTGATATCAAACGGAAACATGAGCGCTTGTACAAATTA
TTAGAAGAAGAGGAAAATGAGAACCATGAAGAAGAGAGAGAGAATACACGAGAGTCATCA
CTTCGAGATCATCAGGTTGAACCCATGGAACATTAGGAAAAGGATGCTGCTTTCAAAAAA
TATGCCCAAAATTCAGTGATTTGGGGCGGTTTCTGTAGAGTATAATGGATATTATTTCTT
TTAGAAAAGTTCCAGAGAATCATGTAGATACACAAAATGTATTAGAGCTCAAATAAATAT
TGATTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACAATGATTGGTTTTCCCTTGAGAAATGTTTTGCAGTGTCTGATGAAACTCTAGAT
TATGCCATATTAAAACTAAGCAAAAATGGACATAGATTTCCTCCAGGCCTGTTTCAACAT
GTTTCCCCTCAACCATCAGGTGGTTTGATTTATTTAATTGGTCACCCAGAAGGCCAGATC
AAGAAAATAGATGGTTGTATGGTGATTCCTCTGGAGCAACGGTTAGAGAGTTACCCAGAA
AATCATCGAGATAGGGTGGCAGGAACCCATGCTCCCATTTATAATGCTTGTCCTGTGCTT
ACCCAAAGAAGTTTCCTGACAGAGGCTTGGAGCCGTGAAACACTTAGTTATGATACTTGC
TTCTCCAGTGGGTCCTCTGGCTCCCCAGTGTTTAATGCATCTGGCCGTTTGGTTGCTATG
CACTCCTTTGGGCATTTTTATAGACATGAAAATAAGGTTTATGCTCTTATTGAATTTGGC
TATTCTATGGATTCAATTCTTAGTGATATCAAACGGAAACATGAGCGCTTGTACAAATTA
TTAGAAGAAGAGGAAAATGAGAACCATGAAGAAGAGAGAGAGAATACACGAGAGTCATCA
CTTCGAGATCATCAGGTTGAACCCATGGAACATTAGGAAAAGGATGCTGCTTTCAAAAAA
TATGCCCAAAATTCAGTGATTTGGGGCGGTTTCTGTAGAGTATAATGGATATTATTTCTT
TTAGAAAAGTTCCAGAGAATCATGTAGATACACAAAATGTATTAGAGCTCAAATAAATAT
TGATTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831980|ref|XP_586292.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831980|ref|XP_586292.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               128-247, + strand, RNAz p=0.861024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-247, + strand, RNAz p=0.861024

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-685, gnl|bosTau2|chr15 (52405276-52404596)
               

               
               9-685, gnl|Hg17|chr11 (58649727-58650389)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-685, gnl|bosTau2|chr15 (52405276-52404596)
               

               
               9-685, gnl|Hg17|chr11 (58649727-58650389)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

	9-685, gnl\|bosTau2\|chr15 (52405276-52404596)
	9-685, gnl\|Hg17\|chr11 (58649727-58650389)

	cmu (0.186393)
	gul (0.177588)
	liv (0.146284)
	spl (0.143184)
	lyg (0.133103)
	thg (0.126791)