Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M07.3

Sequence:


               
               TTTTTTTTTTTTTTTTTAAAATTTTCAATCATATTTATTTATTGCAGAAAAATAATATAC
AAAGATATTTACAAAACAATCATAAAAATATGAATGCATTTAGACACCGGATCTATTTGC
ATTTTACCATGGGTCATCAATAAATAAATAGAATGTTGTTTTTTGTATTTTAAGTTTTTT
TTTCCTTCAGAGGAAAATCGAAAAAAGGAATTGACTGACTGTGATTTTGCAAGTCAGTTT
GATTCCGTATTTTTATTTCTAAAGGTGTTCTTAAAATTCCTCTGTTACCATTTTAAAATG
GAGAAAGTCCATAATGATGCCTTTCCTTTCAGTGGCTGATTGGCACGACCTCTTGAGAAT
GCATGCATGAGAAAATAAAAATAAAAACATTCTTCGTCAAATTAAAAAAAAAAAAAGAAC
ATAGACAACTGTTCAAACTTCTATCAGAATGTAGAGGTGTGAGGATGGTGCCGCTGCCCG
TCTGGGAATCACTGTCCACGGGCCTGTCTCGCTTTCTCTTTTAAAAGTGCGCCCCACGCC
CTGTTTCTTTGAATTTGGGTTCTGCTCTTCTAATTTCCAAGAAAATCTTTGGCATATATA
TTTATTTTTAGTTATCCAGCTCCAGAGTCTCTAGACTGTCCATTTTCTCCTTCTCTGGAA
ACAATGACATCTAGGTCTCCGGCCCTGCCGAGGGAGTGGGGAGCTCCGCCTGCTAGTGGG
ACGCGGACATGGACCAGGCCCCCTCCATCCTCCACACCGAGAAGGCGTAGCTGAGCCGCT
CGTGGGCCACATAGCTGCAACTGGCCATCTTGGAGTCCAGCTCGTCACTCTGTAGGACCT
GGTAGAGGAAGTCGATGTACCTGGCCGCCAACTTGAGGGTCTGGATCTTGCTCAGCTTGT
CTGAGGGCAGCGTGGGGATGATCTTCCTCAGTGCGGCGAACGCCTCATTCAGCGACTGTG
TGCGCTGGCGCTCCCGCACGTTGGCCATGACCCGCTGTGTCTGCAGCTCCTCGTAGGACT
GCGGACTCCCGCCGCCGCTGCTGCTACCGCCTCCTCCCGCGCCGCCGCCGCCGCCGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTAAAATTTTCAATCATATTTATTTATTGCAGAAAAATAATATAC
AAAGATATTTACAAAACAATCATAAAAATATGAATGCATTTAGACACCGGATCTATTTGC
ATTTTACCATGGGTCATCAATAAATAAATAGAATGTTGTTTTTTGTATTTTAAGTTTTTT
TTTCCTTCAGAGGAAAATCGAAAAAAGGAATTGACTGACTGTGATTTTGCAAGTCAGTTT
GATTCCGTATTTTTATTTCTAAAGGTGTTCTTAAAATTCCTCTGTTACCATTTTAAAATG
GAGAAAGTCCATAATGATGCCTTTCCTTTCAGTGGCTGATTGGCACGACCTCTTGAGAAT
GCATGCATGAGAAAATAAAAATAAAAACATTCTTCGTCAAATTAAAAAAAAAAAAAGAAC
ATAGACAACTGTTCAAACTTCTATCAGAATGTAGAGGTGTGAGGATGGTGCCGCTGCCCG
TCTGGGAATCACTGTCCACGGGCCTGTCTCGCTTTCTCTTTTAAAAGTGCGCCCCACGCC
CTGTTTCTTTGAATTTGGGTTCTGCTCTTCTAATTTCCAAGAAAATCTTTGGCATATATA
TTTATTTTTAGTTATCCAGCTCCAGAGTCTCTAGACTGTCCATTTTCTCCTTCTCTGGAA
ACAATGACATCTAGGTCTCCGGCCCTGCCGAGGGAGTGGGGAGCTCCGCCTGCTAGTGGG
ACGCGGACATGGACCAGGCCCCCTCCATCCTCCACACCGAGAAGGCGTAGCTGAGCCGCT
CGTGGGCCACATAGCTGCAACTGGCCATCTTGGAGTCCAGCTCGTCACTCTGTAGGACCT
GGTAGAGGAAGTCGATGTACCTGGCCGCCAACTTGAGGGTCTGGATCTTGCTCAGCTTGT
CTGAGGGCAGCGTGGGGATGATCTTCCTCAGTGCGGCGAACGCCTCATTCAGCGACTGTG
TGCGCTGGCGCTCCCGCACGTTGGCCATGACCCGCTGTGTCTGCAGCTCCTCGTAGGACT
GCGGACTCCCGCCGCCGCTGCTGCTACCGCCTCCTCCCGCGCCGCCGCCGCCGCCGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38112379|gb|AAR11276.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38112379|gb|AAR11276.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               830-1071, gnl|bosTau2|chr13 (18231359-18231605)
               

               
               830-1071, gnl|Hg17|chr10 (23522125-23521873)
               

               
               830-1071, gnl|Mm7|chr2 (19511670-19511415)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               830-1071, gnl|bosTau2|chr13 (18231359-18231605)
               

               
               830-1071, gnl|Hg17|chr10 (23522125-23521873)
               

               
               830-1071, gnl|Mm7|chr2 (19511670-19511415)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fat (0.294855)
               

               
               csk (0.281492)
               

               
               eep (0.245128)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               csk (0.281492)
               

               
               eep (0.245128)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	830-1071, gnl\|bosTau2\|chr13 (18231359-18231605)
	830-1071, gnl\|Hg17\|chr10 (23522125-23521873)
	830-1071, gnl\|Mm7\|chr2 (19511670-19511415)

	fat (0.294855)
	csk (0.281492)
	eep (0.245128)
	tes (0.207814)
	nep (0.183925)
	gul (0.177588)
	rec (0.17307)
	cut (0.169924)
	isp (0.150376)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	jca (0.11396)
	jej (0.0989218)