Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M08.5

Sequence:


               
               AGGTGTCTCTGGTGAAGAGGGTGAAGCAGGAGAAAGGGGTGAACTCGGAGATATAGGATT
ACCTGGCCCAAAAGGATCCGTAGGTAACCCTGGGGAGCCTGGCTTGAGGGGACCTGAAGG
AAGCCGGGGGCTTCCTGGAGTGGAAGGACCTCGAGGACCACCTGGCCCGCGAGGCGTGCA
GGGAGAACAGGGCGCCACTGGCCTGCCGGGGATTGAAGGTCCTCCAGGTAGAGCACCAAC
TGATCAGCACATTAAGCAGGTTTGCATGAGAGTCATGCAAGAGCATTTTGCTGCGATGGC
TGCTAGCCTCAAGCGTCCGGAATCAGGAGCCTCTGGCCTCCCTGGGCGTCCTGGTCCCCC
TGGCCCCCCAGGTCCCCCTGGAGAGAATGGTTTCCCAGGCCAGATGGGACTTCGTGGCCT
TCCAGGCATGAAAGGGCCCCCTGGGGCTCTTGGTTTGAGGGGACCTAAAGGTGACATGGG
AGAAAGAGGTGATCGTGGCCCTCCAGGAAGAGGTCCCAAAGGTTTGCCCGGAGCTACAGG
TCTTCCAGGTGACCCGGGACCTGCCAGCTACGGGAGGAATGGCCGGGACGGCGAGCGAGG
ACCCCCAGGGGTGGCAGGCATTCCTGGTGTACCCGGCCCCCCAGGCCCTCCTGGGCCTCC
TGGTTTCTGCGAACCAGCCTCCTGCACCATGCAGGCTGGGCAGCGGGCATTTAATAGCAA
GGGTCCTGACCAGTGAAAGGTTAGTGTTGCATGACTGCATAAACCATGCCTGGTGAAGTG
GCTTGGAGGAGAAACCACCTGAAGCCAGGCAAAGGTGACAGTGCATCACCCTCAAGGTTA
TTCTAGAAGTCGCACCTGATGATCAGGTTAGAACAATGGTGCTATTCAAGAAATCCTCTT
TCCTTTCCGTGGAGGGGAGCCGGTGGTGTTATCCATCAAACAAGCAAAACCCCTCCCTTG
AAGTAAATTTATAGTCCTGTCCCCAGGATCTTGAACTTGTGTGCTAGCCATGTGTGGCGT
GTCATGGGCCACTGTGCCAATAAACAAAAACAACTGTTTGGTTTACCTCAGTTGCAGTAA
TTTTCATTTTTTATTTAGAGCTTGTTCTCAGATGATTGTTTCAGCTCTACCGTGGATTTC
CAGACTAGTTGTGAAGAAACCCCCACTGCAGGCAATAAAATTGGTTCATAACCACCCCCC
CACTACCACCTCCCTGCACTGTGCACTCTCAGGGGTGCAGGGAACCTCTGCCATATACAG
TGGTTTCCTTACAGCACATGGGGGTTCTCAGCATCAGCTTGAATTTTCTTGAACTGTACT
GTATCCCAAACCTGTTACTGTTTTGGGCTCCTCTGTGTGAAAGCAAAGAAGGAATTTTAA
TACCTGCCATTCATGTCATATTAATGAGATTATTTATTTTAAAGGTTTGAGGTAACGTTT
CTGGTTGTACCAAAGAAGCAATAAATATGGTTTATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGTCTCTGGTGAAGAGGGTGAAGCAGGAGAAAGGGGTGAACTCGGAGATATAGGATT
ACCTGGCCCAAAAGGATCCGTAGGTAACCCTGGGGAGCCTGGCTTGAGGGGACCTGAAGG
AAGCCGGGGGCTTCCTGGAGTGGAAGGACCTCGAGGACCACCTGGCCCGCGAGGCGTGCA
GGGAGAACAGGGCGCCACTGGCCTGCCGGGGATTGAAGGTCCTCCAGGTAGAGCACCAAC
TGATCAGCACATTAAGCAGGTTTGCATGAGAGTCATGCAAGAGCATTTTGCTGCGATGGC
TGCTAGCCTCAAGCGTCCGGAATCAGGAGCCTCTGGCCTCCCTGGGCGTCCTGGTCCCCC
TGGCCCCCCAGGTCCCCCTGGAGAGAATGGTTTCCCAGGCCAGATGGGACTTCGTGGCCT
TCCAGGCATGAAAGGGCCCCCTGGGGCTCTTGGTTTGAGGGGACCTAAAGGTGACATGGG
AGAAAGAGGTGATCGTGGCCCTCCAGGAAGAGGTCCCAAAGGTTTGCCCGGAGCTACAGG
TCTTCCAGGTGACCCGGGACCTGCCAGCTACGGGAGGAATGGCCGGGACGGCGAGCGAGG
ACCCCCAGGGGTGGCAGGCATTCCTGGTGTACCCGGCCCCCCAGGCCCTCCTGGGCCTCC
TGGTTTCTGCGAACCAGCCTCCTGCACCATGCAGGCTGGGCAGCGGGCATTTAATAGCAA
GGGTCCTGACCAGTGAAAGGTTAGTGTTGCATGACTGCATAAACCATGCCTGGTGAAGTG
GCTTGGAGGAGAAACCACCTGAAGCCAGGCAAAGGTGACAGTGCATCACCCTCAAGGTTA
TTCTAGAAGTCGCACCTGATGATCAGGTTAGAACAATGGTGCTATTCAAGAAATCCTCTT
TCCTTTCCGTGGAGGGGAGCCGGTGGTGTTATCCATCAAACAAGCAAAACCCCTCCCTTG
AAGTAAATTTATAGTCCTGTCCCCAGGATCTTGAACTTGTGTGCTAGCCATGTGTGGCGT
GTCATGGGCCACTGTGCCAATAAACAAAAACAACTGTTTGGTTTACCTCAGTTGCAGTAA
TTTTCATTTTTTATTTAGAGCTTGTTCTCAGATGATTGTTTCAGCTCTACCGTGGATTTC
CAGACTAGTTGTGAAGAAACCCCCACTGCAGGCAATAAAATTGGTTCATAACCACCCCCC
CACTACCACCTCCCTGCACTGTGCACTCTCAGGGGTGCAGGGAACCTCTGCCATATACAG
TGGTTTCCTTACAGCACATGGGGGTTCTCAGCATCAGCTTGAATTTTCTTGAACTGTACT
GTATCCCAAACCTGTTACTGTTTTGGGCTCCTCTGTGTGAAAGCAAAGAAGGAATTTTAA
TACCTGCCATTCATGTCATATTAATGAGATTATTTATTTTAAAGGTTTGAGGTAACGTTT
CTGGTTGTACCAAAGAAGCAATAAATATGGTTTATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847990|ref|XP_582924.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847990|ref|XP_582924.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               785-1477, gnl|bosTau2|chr9 (4041758-4041080)
               

               
               785-1477, gnl|Hg17|chr6 (70983296-70982551)
               

               
               785-1477, gnl|Mm7|chr1 (24462020-24462715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               785-1477, gnl|bosTau2|chr9 (4041758-4041080)
               

               
               785-1477, gnl|Hg17|chr6 (70983296-70982551)
               

               
               785-1477, gnl|Mm7|chr1 (24462020-24462715)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (4.92746)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (4.92746)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               hyp (0.142837)

	785-1477, gnl\|bosTau2\|chr9 (4041758-4041080)
	785-1477, gnl\|Hg17\|chr6 (70983296-70982551)
	785-1477, gnl\|Mm7\|chr1 (24462020-24462715)