Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M14.3

Sequence:


               
               GCGGCTTGTCCCTAGGAAGAAGCGATTCACACACCATTTGAATTTCGCAGACGGAAAGGT
GTTTTTGTTTTCTGTTTGATGACTTTTCGAAAACTAGCTTCTGGGCGTCGCGATGGCCTC
GGTCGGTCGGTTGGTCCGTCGGTTGGTCGGTCGGTCGGTCGGGTGGAGGCACCTGCAGAG
AGCTGAGCGAAGCAGCAGCTTCCCCGGGGGCTGGGGCTAGAGCGGAACCCCAGAAGGGTC
CAGCACTTTTTGTTTCTTTTGCTTTCTTTTTCCTTTTCGTGGGTGGGTTTTGTTTTGGTC
TCTCTTTTTCTTTCTTCTTCTTTTTTTTTAATTTTAGTCTCATTAAGGAGAAACTTTTAC
TGGGGCAAAGAGCCGATGGCTGCCCTGCCCCAGGGCGGGGGCCTTCCTATGAATGTAAGA
CTGAAATCACCAGCGAAAGGGAGTCGTCCTAAGTGCTGGCCACGGCCTTATTTGCAAAAG
GGGCAGGCCCTCTAATTTAAAGTGTTTTTAAATAAAGTAGACACCACTGAACAAGGAATG
TACTGAAATGACTTCCTTAGGGATAGAGCTAAGGGATAATAACTTGCACTAAAATACATT
TAAATACTTGATTCCATGAGTCAGTTTATTGTAGTTTTTGATTTCTGTAAAATAAGAGAA
ACTTTTTGTATTTATTATTGAATAAGTGAATGAAGCTATTTTTAAATAAAAGTTAGAAGA
AAGCCAAGCTGCTGCTGTTACCTGCAAAACTAACAAACCTGTTACTTTGTACAAATATGT
AAATATTTTGAGAAAAAAATACAGTATAAAAATAGTTATTGACCAAATGCTACCAGGCTC
TGCAGCAGCTCGGGTGCTTATAAAATGTTCATAGGGGTGTTACAATATAATTTTGTTATT
AAATATGCCATTATAATTATGTAATAACCAAAATTTCAACCTAGAGTGTTTGGGGTTTTT
TGCAAATTACGATCTATTAGTACTTAATTGTTTTCTACACCTTACTTCTGACAGAACGGA
GTGTATGCTATGACTACAACTTTTATAGCCGTTTTGGTAATTTAAACTAACTTTTTCATA
TTATATTGCTGCATCCCTACTTCTTCAGTCAGGTTTTTTTGTGCTTACAATTTGTGATAA
CTGTGAATAACTGCTTAAAAATACACCCAAATGGAGGCTGAATTTTTCTTCAGCGAAAGT
AGTTTTGATTAGAACCTTGTTTCAAGCCACAAAAAATCATGTAAAACATTACTAGGATCA
TGTAGCAGGAACTGAAATCTAACTCTATAGCCTTCTATTTAACACAAAAATTTGAAAAAG
AAAAAAAAAAAAAAAGACAGAGACGTGATTATGCTTGCAGCTGCAGGACCCCGGCAATAG
GGTTTTGGAAGATGTAATTTTAAAATGTGTTGGTATGAACTGTTTGTTTACATTTCTTTA
ATAAAAAAACACTGTTTTGTGTTTGCTTGTAGAAACTTAATCAGCATTTTGAACCAGGTT
AGCTTTTTATTTTGTACTTAAAATTCTGGTACTGACACTTCGCAGGCTGAGTATAAAATG
AAGTTTTCGTGTGCACAATTCAAGTGGGCTGTAAGCTGTCGGTATGTTCAGTGATGCAGT
TCTGAACTTGTAATGTATATGGCATGATGTATTTTTATCTTACAGAATAAATCAATTGTA
TATATTTTTCTCTTGATAAATAGCTGTATGAAATTTGTTTCTTGAATATTTTTCTTCTCT
TGTACAATATTCTGACATCCTACCAGTATTTGTCCTCGGGTTTTTGTTCTGTTTTCTGTT
CTGTATAATAGTATCTAATGTTGGCAAAAATTGAATTTTTTGAAGTATACAGAGTGTTAT
GGGTTTTGGAATTTGTGGACACAGATTTAGAAGATCACCATTTACAAATAAAATATTTTA
CATCTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTTGTCCCTAGGAAGAAGCGATTCACACACCATTTGAATTTCGCAGACGGAAAGGT
GTTTTTGTTTTCTGTTTGATGACTTTTCGAAAACTAGCTTCTGGGCGTCGCGATGGCCTC
GGTCGGTCGGTTGGTCCGTCGGTTGGTCGGTCGGTCGGTCGGGTGGAGGCACCTGCAGAG
AGCTGAGCGAAGCAGCAGCTTCCCCGGGGGCTGGGGCTAGAGCGGAACCCCAGAAGGGTC
CAGCACTTTTTGTTTCTTTTGCTTTCTTTTTCCTTTTCGTGGGTGGGTTTTGTTTTGGTC
TCTCTTTTTCTTTCTTCTTCTTTTTTTTTAATTTTAGTCTCATTAAGGAGAAACTTTTAC
TGGGGCAAAGAGCCGATGGCTGCCCTGCCCCAGGGCGGGGGCCTTCCTATGAATGTAAGA
CTGAAATCACCAGCGAAAGGGAGTCGTCCTAAGTGCTGGCCACGGCCTTATTTGCAAAAG
GGGCAGGCCCTCTAATTTAAAGTGTTTTTAAATAAAGTAGACACCACTGAACAAGGAATG
TACTGAAATGACTTCCTTAGGGATAGAGCTAAGGGATAATAACTTGCACTAAAATACATT
TAAATACTTGATTCCATGAGTCAGTTTATTGTAGTTTTTGATTTCTGTAAAATAAGAGAA
ACTTTTTGTATTTATTATTGAATAAGTGAATGAAGCTATTTTTAAATAAAAGTTAGAAGA
AAGCCAAGCTGCTGCTGTTACCTGCAAAACTAACAAACCTGTTACTTTGTACAAATATGT
AAATATTTTGAGAAAAAAATACAGTATAAAAATAGTTATTGACCAAATGCTACCAGGCTC
TGCAGCAGCTCGGGTGCTTATAAAATGTTCATAGGGGTGTTACAATATAATTTTGTTATT
AAATATGCCATTATAATTATGTAATAACCAAAATTTCAACCTAGAGTGTTTGGGGTTTTT
TGCAAATTACGATCTATTAGTACTTAATTGTTTTCTACACCTTACTTCTGACAGAACGGA
GTGTATGCTATGACTACAACTTTTATAGCCGTTTTGGTAATTTAAACTAACTTTTTCATA
TTATATTGCTGCATCCCTACTTCTTCAGTCAGGTTTTTTTGTGCTTACAATTTGTGATAA
CTGTGAATAACTGCTTAAAAATACACCCAAATGGAGGCTGAATTTTTCTTCAGCGAAAGT
AGTTTTGATTAGAACCTTGTTTCAAGCCACAAAAAATCATGTAAAACATTACTAGGATCA
TGTAGCAGGAACTGAAATCTAACTCTATAGCCTTCTATTTAACACAAAAATTTGAAAAAG
AAAAAAAAAAAAAAAGACAGAGACGTGATTATGCTTGCAGCTGCAGGACCCCGGCAATAG
GGTTTTGGAAGATGTAATTTTAAAATGTGTTGGTATGAACTGTTTGTTTACATTTCTTTA
ATAAAAAAACACTGTTTTGTGTTTGCTTGTAGAAACTTAATCAGCATTTTGAACCAGGTT
AGCTTTTTATTTTGTACTTAAAATTCTGGTACTGACACTTCGCAGGCTGAGTATAAAATG
AAGTTTTCGTGTGCACAATTCAAGTGGGCTGTAAGCTGTCGGTATGTTCAGTGATGCAGT
TCTGAACTTGTAATGTATATGGCATGATGTATTTTTATCTTACAGAATAAATCAATTGTA
TATATTTTTCTCTTGATAAATAGCTGTATGAAATTTGTTTCTTGAATATTTTTCTTCTCT
TGTACAATATTCTGACATCCTACCAGTATTTGTCCTCGGGTTTTTGTTCTGTTTTCTGTT
CTGTATAATAGTATCTAATGTTGGCAAAAATTGAATTTTTTGAAGTATACAGAGTGTTAT
GGGTTTTGGAATTTGTGGACACAGATTTAGAAGATCACCATTTACAAATAAAATATTTTA
CATCTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               957-1944, gnl|bosTau2|chr2 (12676666-12675687)
               

               
               957-1944, gnl|Hg17|chr7 (151270619-151269659)
               

               
               957-1944, gnl|Mm7|chr5 (24313256-24312288)
               


               
               1716-1919, gnl|bosTau2|chr12 (38355145-38355358)
               

               
               1716-1919, gnl|Mm7|chr5 (24312496-24312297)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               957-1944, gnl|bosTau2|chr2 (12676666-12675687)
               

               
               957-1944, gnl|Hg17|chr7 (151270619-151269659)
               

               
               957-1944, gnl|Mm7|chr5 (24313256-24312288)
               


               
               1716-1919, gnl|bosTau2|chr12 (38355145-38355358)
               

               
               1716-1919, gnl|Mm7|chr5 (24312496-24312297)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               rec (0.865351)
               

               
               ret (0.7724)
               

               
               sin (0.69979)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               spl (0.572738)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.865351)
               

               
               ret (0.7724)
               

               
               sin (0.69979)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               spl (0.572738)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	957-1944, gnl\|bosTau2\|chr2 (12676666-12675687)
	957-1944, gnl\|Hg17\|chr7 (151270619-151269659)
	957-1944, gnl\|Mm7\|chr5 (24313256-24312288)

	1716-1919, gnl\|bosTau2\|chr12 (38355145-38355358)
	1716-1919, gnl\|Mm7\|chr5 (24312496-24312297)

	rec (0.865351)
	ret (0.7724)
	sin (0.69979)
	lyg (0.665513)
	thg (0.633955)
	spl (0.572738)
	cbe (0.478469)
	mgp (0.461361)
	isp (0.451128)
	fat (0.442282)
	lin (0.436808)
	aor (0.390549)
	fco (0.314416)
	sme (0.305437)
	ski (0.29347)
	lnt (0.284616)
	ova (0.258264)
	sug (0.254582)
	tra (0.246184)
	ecc (0.23007)
	cbl (0.229595)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	cki (0.165235)
	csp (0.161186)
	tbr (0.154178)
	bfe (0.149858)
	liv (0.146284)
	csk (0.140746)
	nca (0.136874)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)