Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M18.5

Sequence:


               
               GAGGGAGGTTTGAAGGAATCCAGGAAGGAAGACATAGCCATCAATGGGGAGGTGGAAGGA
AAGGAGGAGCAGGAAACTAAGGAGAAAGGCAGTGGGGGGGAAGAGGAGAAAGGGGTGGTT
ACCAATGGGCTAGACTTGAGCCCGGGTGATAGAAGTGAGGAGAAAGTGGTGGTGACCAAA
AAGGTAGAAAAAATCACCAGTGAGGGGGGAGATGGTGCTACCAAATACATCACCAAATCT
GTAACCGTCACTCAAAAGGTCGAAGAGCATGAAGAGACCTTTGAGGAGAAACTCGTGTCT
ACCAAAAAAGTAGAGAAGGTCACTTCCCATGCCATCGTAAAGGAAGTCACCCAGAGTGAC
TAATATTTGAGTCCATCGCAAAAGGTTAAGCCATATGACAATTTCCAAATGCATGTGATT
GACAGCTTCAAAACAGAACGGGTTCTCCCATGGGGGCTCCAGACATTGTATTTTACTTTG
TGCAATACGAGGGACCTGCATGCAAGCTCAGGGTGCTCCCTCCTCAGTCTTTGGGTGATT
CAAATGCATGATACTGTATGTACCTGGGGAATTGGCCAATTTCCTAAGCTGTTGGAAGGG
GGGCACTAGCGGGGATGTCTTGAGATGTATTATACGAAGAACCAACTGAGCCAAAAATAA
TAAATGAAACACAGAACTCTCTTAGCCTTAAGAAAGCTATATATGAATAATTATGTTTAC
CTCACTGGTGCATTTAAAAAGGACTTTTGTTCATGGGAGAACCTCGTTGACATGCACAGT
TTGCAACTTTTCCGTTGATTGATGTTAAACGTCACAGCAGTATTTGCTCAATAAAGGTCA
TATTGGAAACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGAGGTTTGAAGGAATCCAGGAAGGAAGACATAGCCATCAATGGGGAGGTGGAAGGA
AAGGAGGAGCAGGAAACTAAGGAGAAAGGCAGTGGGGGGGAAGAGGAGAAAGGGGTGGTT
ACCAATGGGCTAGACTTGAGCCCGGGTGATAGAAGTGAGGAGAAAGTGGTGGTGACCAAA
AAGGTAGAAAAAATCACCAGTGAGGGGGGAGATGGTGCTACCAAATACATCACCAAATCT
GTAACCGTCACTCAAAAGGTCGAAGAGCATGAAGAGACCTTTGAGGAGAAACTCGTGTCT
ACCAAAAAAGTAGAGAAGGTCACTTCCCATGCCATCGTAAAGGAAGTCACCCAGAGTGAC
TAATATTTGAGTCCATCGCAAAAGGTTAAGCCATATGACAATTTCCAAATGCATGTGATT
GACAGCTTCAAAACAGAACGGGTTCTCCCATGGGGGCTCCAGACATTGTATTTTACTTTG
TGCAATACGAGGGACCTGCATGCAAGCTCAGGGTGCTCCCTCCTCAGTCTTTGGGTGATT
CAAATGCATGATACTGTATGTACCTGGGGAATTGGCCAATTTCCTAAGCTGTTGGAAGGG
GGGCACTAGCGGGGATGTCTTGAGATGTATTATACGAAGAACCAACTGAGCCAAAAATAA
TAAATGAAACACAGAACTCTCTTAGCCTTAAGAAAGCTATATATGAATAATTATGTTTAC
CTCACTGGTGCATTTAAAAAGGACTTTTGTTCATGGGAGAACCTCGTTGACATGCACAGT
TTGCAACTTTTCCGTTGATTGATGTTAAACGTCACAGCAGTATTTGCTCAATAAAGGTCA
TATTGGAAACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-363, - strand, RNAz p=0.983614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-363, - strand, RNAz p=0.983614

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               144-363, BP248269 Sugano cDNA library, embryo kidney Homo sapiens cDNA clone 
(dbj|BP248269.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, AL517561 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone 
(emb|AL517561.3|), blast E-value=0, identity=94.55% 
               

               
               144-363, AGENCOURT_15338979 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF457357.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, AGENCOURT_16386132 NIH_MGC_229 Homo sapiens cDNA clone 
(gb|CK005403.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, 17000600005751 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335391.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, 17000424018482 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335393.1|), blast E-value=0, identity=94.55%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               144-363, BP248269 Sugano cDNA library, embryo kidney Homo sapiens cDNA clone 
(dbj|BP248269.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, AL517561 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone 
(emb|AL517561.3|), blast E-value=0, identity=94.55% 
               

               
               144-363, AGENCOURT_15338979 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF457357.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, AGENCOURT_16386132 NIH_MGC_229 Homo sapiens cDNA clone 
(gb|CK005403.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, 17000600005751 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335391.1|), blast E-value=0, identity=94.55% 
               

               
               144-363, 17000424018482 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335393.1|), blast E-value=0, identity=94.55%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-853, gnl|bosTau2|chr8 (32236235-32235359)
               

               
               1-853, gnl|Hg17|chr8 (24831626-24832511)
               

               
               1-853, gnl|Mm7|chr14 (62979113-62978223)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-853, gnl|bosTau2|chr8 (32236235-32235359)
               

               
               1-853, gnl|Hg17|chr8 (24831626-24832511)
               

               
               1-853, gnl|Mm7|chr14 (62979113-62978223)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               spc (2.04059)
               

               
               fbs (1.57812)
               

               
               sug (1.52749)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.04059)
               

               
               fbs (1.57812)
               

               
               sug (1.52749)
               

               
               cbe (0.478469)
               

               
               hyp (0.42851)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	144-363, BP248269 Sugano cDNA library, embryo kidney Homo sapiens cDNA clone (dbj\|BP248269.1\|), blast E-value=0, identity=94.55%
	144-363, AL517561 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone (emb\|AL517561.3\|), blast E-value=0, identity=94.55%
	144-363, AGENCOURT_15338979 Lupski_anterior_horn Homo sapiens cDNA clone (gb\|CF457357.1\|), blast E-value=0, identity=94.55%
	144-363, AGENCOURT_16386132 NIH_MGC_229 Homo sapiens cDNA clone (gb\|CK005403.1\|), blast E-value=0, identity=94.55%
	144-363, 17000600005751 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN335391.1\|), blast E-value=0, identity=94.55%
	144-363, 17000424018482 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN335393.1\|), blast E-value=0, identity=94.55%

	1-853, gnl\|bosTau2\|chr8 (32236235-32235359)
	1-853, gnl\|Hg17\|chr8 (24831626-24832511)
	1-853, gnl\|Mm7\|chr14 (62979113-62978223)

	spc (2.04059)
	fbs (1.57812)
	sug (1.52749)
	cbe (0.478469)
	hyp (0.42851)
	fcc (0.197785)
	sto (0.179824)
	fhi (0.169578)
	ret (0.128733)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)