Non-Coding RNA Search

Ss1.1-Pig4-TMW8038M19.5

Sequence:


               
               TAACCGGACTCCGGGCGGAGGGTTGCAGACCAAGTACAAGCGGCTGGAGTCCGCGCTGGC
CTAAAGGGCAGAGAGGTAGCCCGGCCGGGTCGTGCCCACCATGCCCTACCTGCTCATCAG
CACCCAGATCCGCATGGAGGTGGGCCCCACCATGGTGGGTGATGAGCACTCGGATCCAGA
ACTGATGCAGCATCTAGGAGCCTCAAAAAGAAGTGTCCTAGGAAACAACTTTTGTGAGTA
CTATGTCAACGACCCTCCTCGAATAGTCCTGGACAAGCTGGAACGTAGGGGCTTCCGTGT
GCTGAGCATGACAGGGGTGGGCCAGACGCTGGTGTGGTGCCTGCACAAGGAGTGACCCTC
TCACAATGAAGAGCGACTGGCACCCCTTCTTTGGAATGGCTGCCACGGGTGCCGACCCCA
AGCCCCTGCCTCACTTACTATCCTGCCCGTTCTTCACAAATCGTCATTTTCCTCCACCCA
GCACCACTGGCAATGAATGGCCTTCTCAGAAACCTGCCTTGGCCTGTGGGGGAGAGCAGA
GCCCCTGGTCCTGGTGCCCCAGCTGCCCCTCCAGCTTCAGACCTGGTGCAGGGCCTGGAG
GAGACCCTGTCCTGTGGCAGACTGAGGGGCTGGCAAGAGCCAGGCTGCCCCTGGCAGTGA
GTTGGTTGTCCGCCGCATGGCATGGCTCCAGGACTGGGCAGGTGGGTCCTGCATAGCTAG
TCCAAGCCAATAAAGAACTGTGATGAGTGGTTGCTCCTCTGCTCTTCTGGCCACTGACTC
TCACTGCTTGGAGTACCTCCCTGGGGGTCTGCCCACTCCCCAGGAAGGACAGCCAGGCCT
GGGTAGGGCCCTCCGAGGCAAAGCCCAGAAACTGGGGCCATGCACAGGGCAAGCCTGCAC
CCTACACCTATGTATGCCATAGAGGTAGACTCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACCGGACTCCGGGCGGAGGGTTGCAGACCAAGTACAAGCGGCTGGAGTCCGCGCTGGC
CTAAAGGGCAGAGAGGTAGCCCGGCCGGGTCGTGCCCACCATGCCCTACCTGCTCATCAG
CACCCAGATCCGCATGGAGGTGGGCCCCACCATGGTGGGTGATGAGCACTCGGATCCAGA
ACTGATGCAGCATCTAGGAGCCTCAAAAAGAAGTGTCCTAGGAAACAACTTTTGTGAGTA
CTATGTCAACGACCCTCCTCGAATAGTCCTGGACAAGCTGGAACGTAGGGGCTTCCGTGT
GCTGAGCATGACAGGGGTGGGCCAGACGCTGGTGTGGTGCCTGCACAAGGAGTGACCCTC
TCACAATGAAGAGCGACTGGCACCCCTTCTTTGGAATGGCTGCCACGGGTGCCGACCCCA
AGCCCCTGCCTCACTTACTATCCTGCCCGTTCTTCACAAATCGTCATTTTCCTCCACCCA
GCACCACTGGCAATGAATGGCCTTCTCAGAAACCTGCCTTGGCCTGTGGGGGAGAGCAGA
GCCCCTGGTCCTGGTGCCCCAGCTGCCCCTCCAGCTTCAGACCTGGTGCAGGGCCTGGAG
GAGACCCTGTCCTGTGGCAGACTGAGGGGCTGGCAAGAGCCAGGCTGCCCCTGGCAGTGA
GTTGGTTGTCCGCCGCATGGCATGGCTCCAGGACTGGGCAGGTGGGTCCTGCATAGCTAG
TCCAAGCCAATAAAGAACTGTGATGAGTGGTTGCTCCTCTGCTCTTCTGGCCACTGACTC
TCACTGCTTGGAGTACCTCCCTGGGGGTCTGCCCACTCCCCAGGAAGGACAGCCAGGCCT
GGGTAGGGCCCTCCGAGGCAAAGCCCAGAAACTGGGGCCATGCACAGGGCAAGCCTGCAC
CCTACACCTATGTATGCCATAGAGGTAGACTCTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28893139|ref|NP_796131.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28893139|ref|NP_796131.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               472-707, - strand, RNAz p=0.999416
               

               
               779-936, + strand, RNAz p=0.9996

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-707, - strand, RNAz p=0.999416
               

               
               779-936, + strand, RNAz p=0.9996

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-137, gnl|bosTau2|chr10 (26648482-26648621)
               

               
               1-137, gnl|canFam2|chr30 (10889657-10889850)
               

               
               1-137, gnl|echTel1|scaffold_324972 (41695-41872)
               

               
               1-137, gnl|galGal2|chr5 (2456418-2456260)
               

               
               1-137, gnl|hg17|chr15 (38843472-38843667)
               

               
               1-137, gnl|Hg17|chr15 (38843568-38843707)
               

               
               1-137, gnl|mm7|chr2 (118908576-118908683)
               

               
               1-137, gnl|oryCun1|scaffold_211631 (3122-3248)
               

               
               1-137, gnl|panTro1|chr16 (38754828-38755023)
               

               
               1-137, gnl|rheMac2|chr7 (19140406-19140602)
               

               
               1-137, gnl|rn3|chr3 (105579670-105579778)
               


               
               235-936, gnl|bosTau2|chr10 (26651716-26652396)
               

               
               235-936, gnl|Hg17|chr15 (38846719-38847364)
               

               
               235-936, gnl|Mm7|chr2 (118912794-118913354)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr10 (26648482-26648621)
               

               
               1-137, gnl|canFam2|chr30 (10889657-10889850)
               

               
               1-137, gnl|echTel1|scaffold_324972 (41695-41872)
               

               
               1-137, gnl|galGal2|chr5 (2456418-2456260)
               

               
               1-137, gnl|hg17|chr15 (38843472-38843667)
               

               
               1-137, gnl|Hg17|chr15 (38843568-38843707)
               

               
               1-137, gnl|mm7|chr2 (118908576-118908683)
               

               
               1-137, gnl|oryCun1|scaffold_211631 (3122-3248)
               

               
               1-137, gnl|panTro1|chr16 (38754828-38755023)
               

               
               1-137, gnl|rheMac2|chr7 (19140406-19140602)
               

               
               1-137, gnl|rn3|chr3 (105579670-105579778)
               


               
               235-936, gnl|bosTau2|chr10 (26651716-26652396)
               

               
               235-936, gnl|Hg17|chr15 (38846719-38847364)
               

               
               235-936, gnl|Mm7|chr2 (118912794-118913354)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	472-707, - strand, RNAz p=0.999416
	779-936, + strand, RNAz p=0.9996

	1-137, gnl\|bosTau2\|chr10 (26648482-26648621)
	1-137, gnl\|canFam2\|chr30 (10889657-10889850)
	1-137, gnl\|echTel1\|scaffold_324972 (41695-41872)
	1-137, gnl\|galGal2\|chr5 (2456418-2456260)
	1-137, gnl\|hg17\|chr15 (38843472-38843667)
	1-137, gnl\|Hg17\|chr15 (38843568-38843707)
	1-137, gnl\|mm7\|chr2 (118908576-118908683)
	1-137, gnl\|oryCun1\|scaffold_211631 (3122-3248)
	1-137, gnl\|panTro1\|chr16 (38754828-38755023)
	1-137, gnl\|rheMac2\|chr7 (19140406-19140602)
	1-137, gnl\|rn3\|chr3 (105579670-105579778)

	235-936, gnl\|bosTau2\|chr10 (26651716-26652396)
	235-936, gnl\|Hg17\|chr15 (38846719-38847364)
	235-936, gnl\|Mm7\|chr2 (118912794-118913354)

	cag (0.302389)
	jej (0.296765)
	lnt (0.284616)
	nbm (0.198649)
	duo (0.172801)
	nje (0.16592)
	csp (0.161186)
	hyp (0.142837)
	che (0.136314)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)