Ss1.1-Pig4-TMW8038M21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCCGCCAGCCGGAAGAGCTGCTTTGCGGTTTGGTTTAGGTGTTTCTGCCCCGGGCGA GCTGCAGTTTCTGAGGCCGACTCCAGTAATGGCTTTTGCAAATCTACGGAAAGTGCTTAT CAGTGATAGCCTGGACCCTTGCTGCCGGGAGATCCTGCAAGATGGAGGGTTGCAGGTGGT GGAGAAGCAGAATCTGAGCAAAGAGGAGCTGATAGCCGAGCTGCAGGACTGCGAAGGCCT TATTGTCCGCTCGGCCACCAAGGTGACCTCCGATGTCATCAACGCGGCCAAGAAGCTCCA GGTGGTGGGCAGGGCCGGCACGGGCGTGGACAACGTGGATCTGGAAGCTGCCACCAGGAA GGGGATCCTGGTCATGAACACCCCCAATGGAAACAGCCTCAGTGCCGCGGAGCTCACCTG TGGGATGATCTTGTGCCTGGCCAGGCAGATTCCCCAGGCGACAGCTTCCATGAAGGATGG CAAATGGGAGCGGAAAAAGTTCATGGGAACAGAGCTGAACGGAAAGGTCCTGGGAATTCT CGGCCTGGGCAGAATTGGGAGAGAGGTGGCCACCCGGATGCAATCCTTTGGGATGAAGAC TATAGGGTATGATCCTATCATTGCTCCAGAGGTCTCGGCCTCCTTTGGTGTGCAGCAGCT GCCCCTGGAGGAGATCTGGCCCCTCTGTGATTTTATCACCGTGCATACACCTCTCCTGCC TTCCACCACAGGCCTGCTGAATGACAGCACCTTTGCCCTTTGCAAGAAGGGGGTGCGCGT GGTGAACTGTGCTCGCGGAGGGATCGTGGACGAAGGCGCCCTGCTCCGCGCCCTGCAGTC GGGTCAATGCGCTGGAGCCGCGCTCGACGTGTTCACGGAGGAACCACCCCGGGACCGGGC CTTGGTGGACCACGAGAAGGTCATCAGCTGCCCCCACCTGGGCGCCAGCACGAGGGAGGC CCAGAGCCGCTGCGGGGAGGAAATCGCCATCCAGTTCGTGGACATGGTGAAGGGGAGGTC CCTGGCTGGCGTTGTAAACGCCCAGGCTCTTACCAGTGCCTTCTCTCCACACACCAAGCC TTGGATTGGTCTGGCTGAAGCTCTGGGGGCACTGATGCAAGCCTGGGCTGGGTCCCCCAA AGGGACCATCCAGGTGGTAACACAGGGAACGTCCCTGAAGAATTCTGGGACCTGCCTGAG CCCCGCTGTCATTGTCGGCCTCCTGAAGGAAGCTTCCCATCGGGCGGACGTGAACTTGGT GAACGCCAAGCTGCTGGAGAAAGAGGCTGGCCTCCATGTAACCACCTCCCACAACCCTGC TGCTCCGGGGGAGAAGGGCGGTGCGGAATGCCTCCTGACCGTGGCCCTGGCAGGTGCCCC CTATCAGGCCGTGGGCTTGGTCCAGGGCACTGCACCCATGCTGCACGCACTCAACGGAGC TGTCTTCAGACCAGAAGTGCCTCTGCGCCGAGGCCTGCCCCTGCTCCTGTTCCGGGCTCA GCCCTCCAACCCTACCATGCTGCCGACCATGATTGGCCTCCTGGCAGAAGCAAGGGTGCA GCTGCTGTCCTACCAGACCTCAGTGGTGTCGGATGGGGAGACCTGGCACGTCATGGCCAT CTCCTCCCTGCTGCCCAGCCTGGAGCCCTGGAAGCAGCACGTGACTGAGGCTTTCCAGTT CCATTTCTAACCTGAGGATCACCCGCAGCAGCCTCGCCGGGTTTCCCTGATGAAACATAC CCACTGGGCGAGGCGATCCGCTTTCCTGGGGCTGACACCGCTTTTGCTGCAGACTCCTGC AGTGCAATGATAACCACTCAATAAAGAGCTTACCCAATAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCCGCCAGCCGGAAGAGCTGCTTTGCGGTTTGGTTTAGGTGTTTCTGCCCCGGGCGA GCTGCAGTTTCTGAGGCCGACTCCAGTAATGGCTTTTGCAAATCTACGGAAAGTGCTTAT CAGTGATAGCCTGGACCCTTGCTGCCGGGAGATCCTGCAAGATGGAGGGTTGCAGGTGGT GGAGAAGCAGAATCTGAGCAAAGAGGAGCTGATAGCCGAGCTGCAGGACTGCGAAGGCCT TATTGTCCGCTCGGCCACCAAGGTGACCTCCGATGTCATCAACGCGGCCAAGAAGCTCCA GGTGGTGGGCAGGGCCGGCACGGGCGTGGACAACGTGGATCTGGAAGCTGCCACCAGGAA GGGGATCCTGGTCATGAACACCCCCAATGGAAACAGCCTCAGTGCCGCGGAGCTCACCTG TGGGATGATCTTGTGCCTGGCCAGGCAGATTCCCCAGGCGACAGCTTCCATGAAGGATGG CAAATGGGAGCGGAAAAAGTTCATGGGAACAGAGCTGAACGGAAAGGTCCTGGGAATTCT CGGCCTGGGCAGAATTGGGAGAGAGGTGGCCACCCGGATGCAATCCTTTGGGATGAAGAC TATAGGGTATGATCCTATCATTGCTCCAGAGGTCTCGGCCTCCTTTGGTGTGCAGCAGCT GCCCCTGGAGGAGATCTGGCCCCTCTGTGATTTTATCACCGTGCATACACCTCTCCTGCC TTCCACCACAGGCCTGCTGAATGACAGCACCTTTGCCCTTTGCAAGAAGGGGGTGCGCGT GGTGAACTGTGCTCGCGGAGGGATCGTGGACGAAGGCGCCCTGCTCCGCGCCCTGCAGTC GGGTCAATGCGCTGGAGCCGCGCTCGACGTGTTCACGGAGGAACCACCCCGGGACCGGGC CTTGGTGGACCACGAGAAGGTCATCAGCTGCCCCCACCTGGGCGCCAGCACGAGGGAGGC CCAGAGCCGCTGCGGGGAGGAAATCGCCATCCAGTTCGTGGACATGGTGAAGGGGAGGTC CCTGGCTGGCGTTGTAAACGCCCAGGCTCTTACCAGTGCCTTCTCTCCACACACCAAGCC TTGGATTGGTCTGGCTGAAGCTCTGGGGGCACTGATGCAAGCCTGGGCTGGGTCCCCCAA AGGGACCATCCAGGTGGTAACACAGGGAACGTCCCTGAAGAATTCTGGGACCTGCCTGAG CCCCGCTGTCATTGTCGGCCTCCTGAAGGAAGCTTCCCATCGGGCGGACGTGAACTTGGT GAACGCCAAGCTGCTGGAGAAAGAGGCTGGCCTCCATGTAACCACCTCCCACAACCCTGC TGCTCCGGGGGAGAAGGGCGGTGCGGAATGCCTCCTGACCGTGGCCCTGGCAGGTGCCCC CTATCAGGCCGTGGGCTTGGTCCAGGGCACTGCACCCATGCTGCACGCACTCAACGGAGC TGTCTTCAGACCAGAAGTGCCTCTGCGCCGAGGCCTGCCCCTGCTCCTGTTCCGGGCTCA GCCCTCCAACCCTACCATGCTGCCGACCATGATTGGCCTCCTGGCAGAAGCAAGGGTGCA GCTGCTGTCCTACCAGACCTCAGTGGTGTCGGATGGGGAGACCTGGCACGTCATGGCCAT CTCCTCCCTGCTGCCCAGCCTGGAGCCCTGGAAGCAGCACGTGACTGAGGCTTTCCAGTT CCATTTCTAACCTGAGGATCACCCGCAGCAGCCTCGCCGGGTTTCCCTGATGAAACATAC CCACTGGGCGAGGCGATCCGCTTTCCTGGGGCTGACACCGCTTTTGCTGCAGACTCCTGC AGTGCAATGATAACCACTCAATAAAGAGCTTACCCAATAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1034-1167, - strand, RNAz p=0.990398 | |
| 1034-1127, - strand, RNAz p=0.749026 | |
| 1292-1490, - strand, RNAz p=0.90203 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1034-1167, - strand, RNAz p=0.990398 | |
| 1034-1127, - strand, RNAz p=0.749026 | |
| 1292-1490, - strand, RNAz p=0.90203 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-227, gnl|bosTau2|chr3 (20100040-20099819) | |
| 1-227, gnl|Hg17|chr1 (119966609-119966826) | |
| 1-227, gnl|Mm7|chr3 (98211136-98210918) | |
| 498-598, gnl|bosTau2|chr3 (20088677-20088577) | |
| 498-598, gnl|canFam2|chr17 (59734067-59734146) | |
| 498-598, gnl|danRer3|chrUn (114179186-114179108) | |
| 498-598, gnl|fr1|chrUn (7145728-7145807) | |
| 498-598, gnl|galGal2|chr8 (4172971-4172894) | |
| 498-598, gnl|hg17|chr1 (119981650-119981729) | |
| 498-598, gnl|Hg17|chr1 (119981667-119981767) | |
| 498-598, gnl|loxAfr1|scaffold_23004 (11363-11442) | |
| 498-598, gnl|mm7|chr3 (98199390-98199311) | |
| 498-598, gnl|Mm7|chr3 (98199371-98199271) | |
| 498-598, gnl|monDom2|scaffold_82 (6192765-6192845) | |
| 498-598, gnl|oryCun1|scaffold_201434 (77172-77251) | |
| 498-598, gnl|panTro1|chr1 (119829244-119829323) | |
| 498-598, gnl|rheMac2|chr1 (122642354-122642433) | |
| 498-598, gnl|rn3|chr2 (193128915-193128836) | |
| 498-598, gnl|tetNig1|chr2 (11590057-11589978) | |
| 719-881, gnl|bosTau2|chr3 (20077383-20077221) | |
| 719-881, gnl|Hg17|chr1 (119989947-119990109) | |
| 719-881, gnl|Mm7|chr3 (98192032-98191869) | |
| 1034-1167, gnl|bosTau2|chr3 (20072957-20072823) | |
| 1034-1167, gnl|canFam2|chr17 (59747307-59747422) | |
| 1034-1167, gnl|danRer3|chrUn (114167648-114167545) | |
| 1034-1167, gnl|echTel1|scaffold_319736 (89703-89589) | |
| 1034-1167, gnl|fr1|chrUn (7147212-7147319) | |
| 1034-1167, gnl|hg17|chr1 (119995035-119995150) | |
| 1034-1167, gnl|Hg17|chr1 (119995051-119995184) | |
| 1034-1167, gnl|mm7|chr3 (98187780-98187665) | |
| 1034-1167, gnl|Mm7|chr3 (98187762-98187629) | |
| 1034-1167, gnl|monDom2|scaffold_82 (6214867-6214982) | |
| 1034-1167, gnl|oryCun1|scaffold_174289 (44907-45005) | |
| 1034-1167, gnl|panTro1|chr1 (119842597-119842712) | |
| 1034-1167, gnl|rheMac2|chr1 (122653715-122653830) | |
| 1034-1167, gnl|rn3|chr2 (193113985-193113870) | |
| 1034-1167, gnl|tetNig1|chr2 (11589059-11588949) | |
| 1292-1536, gnl|bosTau2|chr3 (20070708-20070464) | |
| 1292-1536, gnl|Hg17|chr1 (119997466-119997710) | |
| 1292-1536, gnl|Mm7|chr3 (98185635-98185391) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-227, gnl|bosTau2|chr3 (20100040-20099819) | |
| 1-227, gnl|Hg17|chr1 (119966609-119966826) | |
| 1-227, gnl|Mm7|chr3 (98211136-98210918) | |
| 498-598, gnl|bosTau2|chr3 (20088677-20088577) | |
| 498-598, gnl|canFam2|chr17 (59734067-59734146) | |
| 498-598, gnl|danRer3|chrUn (114179186-114179108) | |
| 498-598, gnl|fr1|chrUn (7145728-7145807) | |
| 498-598, gnl|galGal2|chr8 (4172971-4172894) | |
| 498-598, gnl|hg17|chr1 (119981650-119981729) | |
| 498-598, gnl|Hg17|chr1 (119981667-119981767) | |
| 498-598, gnl|loxAfr1|scaffold_23004 (11363-11442) | |
| 498-598, gnl|mm7|chr3 (98199390-98199311) | |
| 498-598, gnl|Mm7|chr3 (98199371-98199271) | |
| 498-598, gnl|monDom2|scaffold_82 (6192765-6192845) | |
| 498-598, gnl|oryCun1|scaffold_201434 (77172-77251) | |
| 498-598, gnl|panTro1|chr1 (119829244-119829323) | |
| 498-598, gnl|rheMac2|chr1 (122642354-122642433) | |
| 498-598, gnl|rn3|chr2 (193128915-193128836) | |
| 498-598, gnl|tetNig1|chr2 (11590057-11589978) | |
| 719-881, gnl|bosTau2|chr3 (20077383-20077221) | |
| 719-881, gnl|Hg17|chr1 (119989947-119990109) | |
| 719-881, gnl|Mm7|chr3 (98192032-98191869) | |
| 1034-1167, gnl|bosTau2|chr3 (20072957-20072823) | |
| 1034-1167, gnl|canFam2|chr17 (59747307-59747422) | |
| 1034-1167, gnl|danRer3|chrUn (114167648-114167545) | |
| 1034-1167, gnl|echTel1|scaffold_319736 (89703-89589) | |
| 1034-1167, gnl|fr1|chrUn (7147212-7147319) | |
| 1034-1167, gnl|hg17|chr1 (119995035-119995150) | |
| 1034-1167, gnl|Hg17|chr1 (119995051-119995184) | |
| 1034-1167, gnl|mm7|chr3 (98187780-98187665) | |
| 1034-1167, gnl|Mm7|chr3 (98187762-98187629) | |
| 1034-1167, gnl|monDom2|scaffold_82 (6214867-6214982) | |
| 1034-1167, gnl|oryCun1|scaffold_174289 (44907-45005) | |
| 1034-1167, gnl|panTro1|chr1 (119842597-119842712) | |
| 1034-1167, gnl|rheMac2|chr1 (122653715-122653830) | |
| 1034-1167, gnl|rn3|chr2 (193113985-193113870) | |
| 1034-1167, gnl|tetNig1|chr2 (11589059-11588949) | |
| 1292-1536, gnl|bosTau2|chr3 (20070708-20070464) | |
| 1292-1536, gnl|Hg17|chr1 (119997466-119997710) | |
| 1292-1536, gnl|Mm7|chr3 (98185635-98185391) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| eep (0.735384) | |
| fli (0.405762) | |
| elu (0.385356) | |
| med (0.348756) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.735384) | |
| fli (0.405762) | |
| elu (0.385356) | |
| med (0.348756) | |
| ebs (0.236602) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| cty (0.10408) |