Ss1.1-Pig4-TMW8038N13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTATGCCATCATCCTGGCCCCCACTCGTGAGCTGGCTCAGCAGATTGAGGAAGAGACCAT CAAGTTTGGGAAGCCGCTAGGCATCCGCACTGTGGCTGTCATTGGTGGCATCTCCAGAGA AGACCAGGGCTTCAGGCTGCGCATGGGTTGTGAGATAGTGATCGCTACCCCAGGACGTCT GATTGATGTGCTGGAGAACCGCTACCTGGTGCTGAGCCGCTGTACCTATGTGGTTCTGGA TGAGGCGGACAGGATGATTGACATGGGCTTTGAGCCAGACGTCCAGAAGATCCTGGAGCA CATGCCCGTCAGCAACCAGAAGCCGGACACGGACGAGGCCGAGGACCCTGAGAAGATGTT GGCCAACTTCGAGTCTGGAAAACATAAGTACCGCCAAACAGTCATGTTCACGGCCACCAT GCCCCCAGCGGTGGAGCGTCTGGCCCGGAGCTACCTTCGGCGACCTGCTGTGGTGTACAT TGGCTCTGCAGGCAAGCCCCACGAACGAGTGGAACAGAAGGTCTTCCTCATGTCAGAGTC AGAAAAGAGGAAAAAGCTGCTGGCAATCTTGGAGCAAGGCTTTGATCCACCCATCATCAT TTTTGTCAACCAGAAGAAAGGCTGTGATGTTTTGGCCAAATCCCTGGAGAAGATGGGGTA CAATGCTTGTACGCTGCATGGTGGAAAAGGCCAGGAGCAGCGAGAGTTTGCCCTCTCCAA CCTCAAGGCTGGGGCCAAGGATATCTTGGTGGCTACAGACGTGGCGGGTCGTGGTATCGA CATCCAAGACGTGTCTATGGTTGTCAACTACGATATGGCCAAAAACATTGAAGATTATAT CCACCGCATTGGCCGCACAGGACGAGCAGGCAAGAGTGGTGTGGCCATCACCTTCCTCAC CAAGGAGGACTCTGCCGTGTTCTACGAGCTGAAGCAAGCCATCCTGGAGAGCCCGGTGTC CTCCTGCCCCCCAGAGCTGGCCAACCACCCGGATGCCCAGCACAAGCCAGGCACCATCCT TACGAAGAAGCGTCGGGAAGAGACCATCTTTGCCTGACCCAGTTCTCTTCCCAGGGTTCA AGGCCATGCTCTGGAGCCTGTTCTTCAGGACCTTCATGTCTCTTTCCAGCTCCTCAGACT TCTGGGGGCTTAGGAAGCAGTCAGACTCCCTCTGGCCCAGACCCTTAGGTCTGAAGGCCT GAGCCCGGGGCTGTGAAAGGAGAGGACGCTGCTGCTGGAGGAGGCAGAGAGAACAGATTA CCATAGATGCTGGCCCCGCCCCGCCCCTCTGGCAGGCTTTGGGATTGCATTGGGCCATTG GCTCTTGCCAGTTACGGGGGCAGCCAATTGGCATTGCCTCCCAGACTGAACAAAAACCTG GCTGCCAGGCTGGGATTTCTTGGGCACAGACTTGACTGCGTAAGCTGCCGCAGCGCCATC ATTGCCCTGGATGACCCAGGGGAGCTGGCGCTGAGAATTATGGACCTTGGACTCCTACTG TCTTTTTGACAGCTGTTTGCCCTTTTGGATTATAAAACAAGTTGAGAGCCTTGTTTAGAG CTGTGTGTGCACAGCCCCCGTGCCAGGGGGTGCTGTGCACTCTAGGCATATCTCACCCAG GGAATTTTTTTAGTAGATTTGGGGACAGGGTGAGCTGGCTGAGTCCATCTTGAAGTCAGA GTGAAATTTCTGTTTTCTATTCTCTGAAAAGATGAGTTTGTATGTTCTGAGAATAAATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTATGCCATCATCCTGGCCCCCACTCGTGAGCTGGCTCAGCAGATTGAGGAAGAGACCAT CAAGTTTGGGAAGCCGCTAGGCATCCGCACTGTGGCTGTCATTGGTGGCATCTCCAGAGA AGACCAGGGCTTCAGGCTGCGCATGGGTTGTGAGATAGTGATCGCTACCCCAGGACGTCT GATTGATGTGCTGGAGAACCGCTACCTGGTGCTGAGCCGCTGTACCTATGTGGTTCTGGA TGAGGCGGACAGGATGATTGACATGGGCTTTGAGCCAGACGTCCAGAAGATCCTGGAGCA CATGCCCGTCAGCAACCAGAAGCCGGACACGGACGAGGCCGAGGACCCTGAGAAGATGTT GGCCAACTTCGAGTCTGGAAAACATAAGTACCGCCAAACAGTCATGTTCACGGCCACCAT GCCCCCAGCGGTGGAGCGTCTGGCCCGGAGCTACCTTCGGCGACCTGCTGTGGTGTACAT TGGCTCTGCAGGCAAGCCCCACGAACGAGTGGAACAGAAGGTCTTCCTCATGTCAGAGTC AGAAAAGAGGAAAAAGCTGCTGGCAATCTTGGAGCAAGGCTTTGATCCACCCATCATCAT TTTTGTCAACCAGAAGAAAGGCTGTGATGTTTTGGCCAAATCCCTGGAGAAGATGGGGTA CAATGCTTGTACGCTGCATGGTGGAAAAGGCCAGGAGCAGCGAGAGTTTGCCCTCTCCAA CCTCAAGGCTGGGGCCAAGGATATCTTGGTGGCTACAGACGTGGCGGGTCGTGGTATCGA CATCCAAGACGTGTCTATGGTTGTCAACTACGATATGGCCAAAAACATTGAAGATTATAT CCACCGCATTGGCCGCACAGGACGAGCAGGCAAGAGTGGTGTGGCCATCACCTTCCTCAC CAAGGAGGACTCTGCCGTGTTCTACGAGCTGAAGCAAGCCATCCTGGAGAGCCCGGTGTC CTCCTGCCCCCCAGAGCTGGCCAACCACCCGGATGCCCAGCACAAGCCAGGCACCATCCT TACGAAGAAGCGTCGGGAAGAGACCATCTTTGCCTGACCCAGTTCTCTTCCCAGGGTTCA AGGCCATGCTCTGGAGCCTGTTCTTCAGGACCTTCATGTCTCTTTCCAGCTCCTCAGACT TCTGGGGGCTTAGGAAGCAGTCAGACTCCCTCTGGCCCAGACCCTTAGGTCTGAAGGCCT GAGCCCGGGGCTGTGAAAGGAGAGGACGCTGCTGCTGGAGGAGGCAGAGAGAACAGATTA CCATAGATGCTGGCCCCGCCCCGCCCCTCTGGCAGGCTTTGGGATTGCATTGGGCCATTG GCTCTTGCCAGTTACGGGGGCAGCCAATTGGCATTGCCTCCCAGACTGAACAAAAACCTG GCTGCCAGGCTGGGATTTCTTGGGCACAGACTTGACTGCGTAAGCTGCCGCAGCGCCATC ATTGCCCTGGATGACCCAGGGGAGCTGGCGCTGAGAATTATGGACCTTGGACTCCTACTG TCTTTTTGACAGCTGTTTGCCCTTTTGGATTATAAAACAAGTTGAGAGCCTTGTTTAGAG CTGTGTGTGCACAGCCCCCGTGCCAGGGGGTGCTGTGCACTCTAGGCATATCTCACCCAG GGAATTTTTTTAGTAGATTTGGGGACAGGGTGAGCTGGCTGAGTCCATCTTGAAGTCAGA GTGAAATTTCTGTTTTCTATTCTCTGAAAAGATGAGTTTGTATGTTCTGAGAATAAATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004818, - | |
| 5' of NM_004818, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 153-397, gnl|bosTau2|chr5 (26267267-26267511) | |
| 153-397, gnl|canFam2|chr27 (8711541-8711331) | |
| 153-397, gnl|danRer3|chr23 (14540144-14540350) | |
| 153-397, gnl|dasNov1|scaffold_2209 (41276-41066) | |
| 153-397, gnl|echTel1|scaffold_325175 (30611-30401) | |
| 153-397, gnl|fr1|chrUn (184501154-184501365) | |
| 153-397, gnl|hg17|chr12 (47513320-47513530) | |
| 153-397, gnl|Hg17|chr12 (47513571-47513327) | |
| 153-397, gnl|loxAfr1|scaffold_15255 (50049-50259) | |
| 153-397, gnl|mm7|chr15 (98633680-98633890) | |
| 153-397, gnl|Mm7|chr15 (98633931-98633687) | |
| 153-397, gnl|monDom2|scaffold_388 (83559-83769) | |
| 153-397, gnl|oryCun1|scaffold_186849 (5398-5608) | |
| 153-397, gnl|panTro1|chr10 (48689766-48689976) | |
| 153-397, gnl|rheMac2|chr11 (45956866-45957076) | |
| 153-397, gnl|rn3|chr7 (137474444-137474653) | |
| 153-397, gnl|tetNig1|chrUn_random (63130766-63130976) | |
| 153-397, gnl|xenTro1|scaffold_133 (1210624-1210834) | |
| 658-831, gnl|bosTau2|chr5 (26269171-26269344) | |
| 658-831, gnl|Hg17|chr12 (47511367-47511194) | |
| 658-831, gnl|Mm7|chr15 (98631718-98631545) | |
| 832-1740, gnl|bosTau2|chr5 (26269776-26270665) | |
| 832-1740, gnl|canFam2|chr27 (8714658-8713948) | |
| 832-1740, gnl|dasNov1|scaffold_2209 (44477-43792) | |
| 832-1740, gnl|echTel1|scaffold_325175 (34379-33707) | |
| 832-1740, gnl|hg17|chr12 (47509755-47510482) | |
| 832-1740, gnl|Hg17|chr12 (47510744-47509825) | |
| 832-1740, gnl|loxAfr1|scaffold_15255 (45968-46686) | |
| 832-1740, gnl|mm7|chr15 (98630292-98630958) | |
| 832-1740, gnl|Mm7|chr15 (98631218-98630346) | |
| 832-1740, gnl|monDom2|scaffold_388 (80479-81136) | |
| 832-1740, gnl|oryCun1|scaffold_201178 (5569-4896) | |
| 832-1740, gnl|panTro1|chr10 (48686198-48686925) | |
| 832-1740, gnl|rheMac2|chr11 (45953304-45954027) | |
| 832-1740, gnl|rn3|chr7 (137471233-137471791) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-397, gnl|bosTau2|chr5 (26267267-26267511) | |
| 153-397, gnl|canFam2|chr27 (8711541-8711331) | |
| 153-397, gnl|danRer3|chr23 (14540144-14540350) | |
| 153-397, gnl|dasNov1|scaffold_2209 (41276-41066) | |
| 153-397, gnl|echTel1|scaffold_325175 (30611-30401) | |
| 153-397, gnl|fr1|chrUn (184501154-184501365) | |
| 153-397, gnl|hg17|chr12 (47513320-47513530) | |
| 153-397, gnl|Hg17|chr12 (47513571-47513327) | |
| 153-397, gnl|loxAfr1|scaffold_15255 (50049-50259) | |
| 153-397, gnl|mm7|chr15 (98633680-98633890) | |
| 153-397, gnl|Mm7|chr15 (98633931-98633687) | |
| 153-397, gnl|monDom2|scaffold_388 (83559-83769) | |
| 153-397, gnl|oryCun1|scaffold_186849 (5398-5608) | |
| 153-397, gnl|panTro1|chr10 (48689766-48689976) | |
| 153-397, gnl|rheMac2|chr11 (45956866-45957076) | |
| 153-397, gnl|rn3|chr7 (137474444-137474653) | |
| 153-397, gnl|tetNig1|chrUn_random (63130766-63130976) | |
| 153-397, gnl|xenTro1|scaffold_133 (1210624-1210834) | |
| 658-831, gnl|bosTau2|chr5 (26269171-26269344) | |
| 658-831, gnl|Hg17|chr12 (47511367-47511194) | |
| 658-831, gnl|Mm7|chr15 (98631718-98631545) | |
| 832-1740, gnl|bosTau2|chr5 (26269776-26270665) | |
| 832-1740, gnl|canFam2|chr27 (8714658-8713948) | |
| 832-1740, gnl|dasNov1|scaffold_2209 (44477-43792) | |
| 832-1740, gnl|echTel1|scaffold_325175 (34379-33707) | |
| 832-1740, gnl|hg17|chr12 (47509755-47510482) | |
| 832-1740, gnl|Hg17|chr12 (47510744-47509825) | |
| 832-1740, gnl|loxAfr1|scaffold_15255 (45968-46686) | |
| 832-1740, gnl|mm7|chr15 (98630292-98630958) | |
| 832-1740, gnl|Mm7|chr15 (98631218-98630346) | |
| 832-1740, gnl|monDom2|scaffold_388 (80479-81136) | |
| 832-1740, gnl|oryCun1|scaffold_201178 (5569-4896) | |
| 832-1740, gnl|panTro1|chr10 (48686198-48686925) | |
| 832-1740, gnl|rheMac2|chr11 (45953304-45954027) | |
| 832-1740, gnl|rn3|chr7 (137471233-137471791) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fli (0.202881) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) |