Non-Coding RNA Search

Ss1.1-Pig4-TMW8038N22.5

Sequence:


               
               AGCTTCCGGTGAGTCCGCGAGGGAGCTGCGGCTCACCATGGCGAACTCTTTGGTCGGGAA
GAAGATCGTGTTTGTCACGGGGAACGCAAAGAAACTAGAGGAGGTCATTCAGATTCTAGG
AGATAAGTTTCCATGCACTCTGGTGGCACAGAAAATTGACCTGCCAGAGTACCAAGGAGA
GCCTGATGAGATTTCCATTCAGAAGTGTAAGGAGGCAGCTCGCCAGGTGCAGGGCCCTGT
ACTGGTGGAGGACACTTGTCTGTGCTTCAACGCCTTTGGAGGCCTCCCTGGTCCCTACAT
AAAGTGGTTTCTGGAGAAGTTAAAGCCTGAAGGTCTTCACCAGCTCCTGGCAGGGTTCCA
GGACAAGTCGGCCTATGCACTCTGCACATTTGCGCTCAGCACTGGGGACCCCAACGAGCC
TGTGCGCCTCTTCAAAGGCCGGACCTCGGGCCAGATTGTGGTGCCTCGAGGCAGCCGGGA
CTTTGGCTGGGACCCCTGCTTTCAGCCTGATGGATACGAGCAAACGTATGCAGAGATGCC
CAAGGCTGAGAAGAACACCATCTCCCATCGCTTCCGGGCCCTGCTGGAGTTGCAAGAGTA
CTTTGGCAGCCTGACTCCTCCTGGGGCTGGTGAGGACCCCTCTGGCCAGGGATCAAGGGA
CGGCTAGCCTGAACCTCCTCTGTCTGGCGGGCACGCGTCCAAATACTTCTTTCAGAGTTG
CCACTTCCTGGGGGTGTTACCAGCTGTCTGGAGCAGTTGGCTCTGCTTGGAGAACATTGG
CCAAAGGACACCATCCTCTTGCCCTTGGGGGTTCAGTGGTCCTCGGTAGCCCCCAGGCCT
GGGGTCCCGATAGGACCTTCGGTGGCAAAACTGGCCTGGGCAGGATTGAGGGTTTCGGGA
AGAACCAATGTTTTTTAAATACAGCAAATAAAAATTCTGGAAGGTTCTTGCTTCCAAAAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCCGGTGAGTCCGCGAGGGAGCTGCGGCTCACCATGGCGAACTCTTTGGTCGGGAA
GAAGATCGTGTTTGTCACGGGGAACGCAAAGAAACTAGAGGAGGTCATTCAGATTCTAGG
AGATAAGTTTCCATGCACTCTGGTGGCACAGAAAATTGACCTGCCAGAGTACCAAGGAGA
GCCTGATGAGATTTCCATTCAGAAGTGTAAGGAGGCAGCTCGCCAGGTGCAGGGCCCTGT
ACTGGTGGAGGACACTTGTCTGTGCTTCAACGCCTTTGGAGGCCTCCCTGGTCCCTACAT
AAAGTGGTTTCTGGAGAAGTTAAAGCCTGAAGGTCTTCACCAGCTCCTGGCAGGGTTCCA
GGACAAGTCGGCCTATGCACTCTGCACATTTGCGCTCAGCACTGGGGACCCCAACGAGCC
TGTGCGCCTCTTCAAAGGCCGGACCTCGGGCCAGATTGTGGTGCCTCGAGGCAGCCGGGA
CTTTGGCTGGGACCCCTGCTTTCAGCCTGATGGATACGAGCAAACGTATGCAGAGATGCC
CAAGGCTGAGAAGAACACCATCTCCCATCGCTTCCGGGCCCTGCTGGAGTTGCAAGAGTA
CTTTGGCAGCCTGACTCCTCCTGGGGCTGGTGAGGACCCCTCTGGCCAGGGATCAAGGGA
CGGCTAGCCTGAACCTCCTCTGTCTGGCGGGCACGCGTCCAAATACTTCTTTCAGAGTTG
CCACTTCCTGGGGGTGTTACCAGCTGTCTGGAGCAGTTGGCTCTGCTTGGAGAACATTGG
CCAAAGGACACCATCCTCTTGCCCTTGGGGGTTCAGTGGTCCTCGGTAGCCCCCAGGCCT
GGGGTCCCGATAGGACCTTCGGTGGCAAAACTGGCCTGGGCAGGATTGAGGGTTTCGGGA
AGAACCAATGTTTTTTAAATACAGCAAATAAAAATTCTGGAAGGTTCTTGCTTCCAAAAT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56203883|emb|CAC16798.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203883|emb|CAC16798.3|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-105, gnl|bosTau2|chr13 (34577416-34577518)
               

               
               3-105, gnl|Hg17|chr20 (3138163-3138265)
               

               
               3-105, gnl|Mm7|chr2 (130408688-130408790)
               


               
               526-963, gnl|bosTau2|chr13 (34589655-34590104)
               

               
               526-963, gnl|Hg17|chr20 (3152012-3152486)
               

               
               526-963, gnl|Mm7|chr2 (130421826-130422450)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-105, gnl|bosTau2|chr13 (34577416-34577518)
               

               
               3-105, gnl|Hg17|chr20 (3138163-3138265)
               

               
               3-105, gnl|Mm7|chr2 (130408688-130408790)
               


               
               526-963, gnl|bosTau2|chr13 (34589655-34590104)
               

               
               526-963, gnl|Hg17|chr20 (3152012-3152486)
               

               
               526-963, gnl|Mm7|chr2 (130421826-130422450)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cki (0.330469)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	3-105, gnl\|bosTau2\|chr13 (34577416-34577518)
	3-105, gnl\|Hg17\|chr20 (3138163-3138265)
	3-105, gnl\|Mm7\|chr2 (130408688-130408790)

	526-963, gnl\|bosTau2\|chr13 (34589655-34590104)
	526-963, gnl\|Hg17\|chr20 (3152012-3152486)
	526-963, gnl\|Mm7\|chr2 (130421826-130422450)

	cki (0.330469)
	cly (0.241284)
	fli (0.202881)
	jej (0.197844)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	ill (0.175593)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	eep (0.122564)
	pgl (0.118483)