Ss1.1-Pig4-TMW8038O06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGCTTAAGCACGACTGCAACAGCCATGATCACGGTCACTGACATCAACGACAACCCA CCCATCTTCAACCCAACCTCGTACCAGGGGTCGGTGCCGGAGAACGAGGCCAACGTGGCA ATCACCACACTCACAGTGACCGATGGTGACGTCGCCAATACCCCGGCGTGGGTGGCTGTT TACACAATATTAAATGATAACGAGAAGCAATTTGTTGTCATCACAGACCCAGTAACCAAT GAAGGCGTTTTGAAAACAGCTAAGGGCTTGGATTTTGAAGCCAAGCAGCAGTACATCCTG TATGTGGCAGTGACTAACGTGGCCCCCTTTGAGGTCACCCTCTCTACTTCCACGGCCACT GTCACCGTGGACGTGATAGATGTGAATGAGGCCCCCATCTTCATCCCTGCTCAGAAGAGG GTGGAAGTGCCTGAGGATTTCGGCGTGGGCCTGGAGATCACATCCTACACTGCCCGGGAG CCAGACACGTTTATGGAACAGAAGATCACGTATCGGATTTGGAGGGATGCTGCCAACTGG CTGGAGATTAATCCAGACACCGGTGCCATTACCACTCGGGCCGAGCTGGACAGAGAGAAC TTTGAGCACGTGAAGAACAGCACATACACGGCCCTCATTATAGCCACTGACAATGGTTCT CCACCCGCTACGGGCACAGGCACCCTTCTCCTGTTCCTCGACGATGTGAATGACAATGGC CCCATACCTGAACCCCGAAATATGGACTTCTGCCAGAGGAACCCACAGCCTCATGTCATC AACATCAATGATCCAGATCTTCCCCCCAACACTTCTCCCTTCACTGCAGAACTAACACAT GGGGCCAGTGCCAACTGGACCATCGAGTTCAACGACCGAGAACATGAATCTCTCATTTTG AAGCCAAAGAAAACCCTCGAGTTTGGCGACTACAAGATCAATCTCAAGCTCACAGACAAC CAGAACAAAGACCAGGTGACCACCTTAGATGTGCACGTATGCGACTGTGAGGGGGTGGCC AACAGCTGCCGGAAGGCCGGGCCTCTGGCCGAAGCAGGATTGCAAGTTCCTGCCATCCTG GGGATTCTGGGAGGCATCCTTGCTTTTCTGATCCTGATTCTGCTGCTCCTGCTCCTTATT CGGAGGAGAAGGGTGGTCAAAGAGCCCTTGCTGCCCCCAGAAGATGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGCTTAAGCACGACTGCAACAGCCATGATCACGGTCACTGACATCAACGACAACCCA CCCATCTTCAACCCAACCTCGTACCAGGGGTCGGTGCCGGAGAACGAGGCCAACGTGGCA ATCACCACACTCACAGTGACCGATGGTGACGTCGCCAATACCCCGGCGTGGGTGGCTGTT TACACAATATTAAATGATAACGAGAAGCAATTTGTTGTCATCACAGACCCAGTAACCAAT GAAGGCGTTTTGAAAACAGCTAAGGGCTTGGATTTTGAAGCCAAGCAGCAGTACATCCTG TATGTGGCAGTGACTAACGTGGCCCCCTTTGAGGTCACCCTCTCTACTTCCACGGCCACT GTCACCGTGGACGTGATAGATGTGAATGAGGCCCCCATCTTCATCCCTGCTCAGAAGAGG GTGGAAGTGCCTGAGGATTTCGGCGTGGGCCTGGAGATCACATCCTACACTGCCCGGGAG CCAGACACGTTTATGGAACAGAAGATCACGTATCGGATTTGGAGGGATGCTGCCAACTGG CTGGAGATTAATCCAGACACCGGTGCCATTACCACTCGGGCCGAGCTGGACAGAGAGAAC TTTGAGCACGTGAAGAACAGCACATACACGGCCCTCATTATAGCCACTGACAATGGTTCT CCACCCGCTACGGGCACAGGCACCCTTCTCCTGTTCCTCGACGATGTGAATGACAATGGC CCCATACCTGAACCCCGAAATATGGACTTCTGCCAGAGGAACCCACAGCCTCATGTCATC AACATCAATGATCCAGATCTTCCCCCCAACACTTCTCCCTTCACTGCAGAACTAACACAT GGGGCCAGTGCCAACTGGACCATCGAGTTCAACGACCGAGAACATGAATCTCTCATTTTG AAGCCAAAGAAAACCCTCGAGTTTGGCGACTACAAGATCAATCTCAAGCTCACAGACAAC CAGAACAAAGACCAGGTGACCACCTTAGATGTGCACGTATGCGACTGTGAGGGGGTGGCC AACAGCTGCCGGAAGGCCGGGCCTCTGGCCGAAGCAGGATTGCAAGTTCCTGCCATCCTG GGGATTCTGGGAGGCATCCTTGCTTTTCTGATCCTGATTCTGCTGCTCCTGCTCCTTATT CGGAGGAGAAGGGTGGTCAAAGAGCCCTTGCTGCCCCCAGAAGATGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 263-381, - strand, RNAz p=0.636801 | |
| 335-454, - strand, RNAz p=0.561107 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 263-381, - strand, RNAz p=0.636801 | |
| 335-454, - strand, RNAz p=0.561107 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 263-512, gnl|bosTau2|chr18 (14230811-14230562) | |
| 263-512, gnl|canFam2|chr5 (83780888-83780616) | |
| 263-512, gnl|danRer3|chr7 (49941031-49940766) | |
| 263-512, gnl|dasNov1|scaffold_29072 (41571-41848) | |
| 263-512, gnl|echTel1|scaffold_287341 (87466-87743) | |
| 263-512, gnl|fr1|chrUn (310172027-310171747) | |
| 263-512, gnl|galGal2|chr11_random (70816-71090) | |
| 263-512, gnl|hg17|chr16 (67406901-67407175) | |
| 263-512, gnl|Hg17|chr16 (67406917-67407166) | |
| 263-512, gnl|loxAfr1|scaffold_7780 (6001-5724) | |
| 263-512, gnl|mm7|chr8 (105259421-105259696) | |
| 263-512, gnl|Mm7|chr8 (105259439-105259688) | |
| 263-512, gnl|monDom2|scaffold_23 (5417809-5417527) | |
| 263-512, gnl|oryCun1|scaffold_168224 (96-363) | |
| 263-512, gnl|panTro1|chr18 (61721542-61721816) | |
| 263-512, gnl|rheMac2|chr20 (67176908-67177182) | |
| 263-512, gnl|rn3|chr19 (36507374-36507650) | |
| 263-512, gnl|tetNig1|chrUn_random (31137640-31137365) | |
| 263-512, gnl|xenTro1|scaffold_132 (1581184-1580910) | |
| 879-1111, gnl|bosTau2|chr18 (14224471-14224239) | |
| 879-1111, gnl|Hg17|chr16 (67414801-67415030) | |
| 879-1111, gnl|Mm7|chr8 (105262839-105263068) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 263-512, gnl|bosTau2|chr18 (14230811-14230562) | |
| 263-512, gnl|canFam2|chr5 (83780888-83780616) | |
| 263-512, gnl|danRer3|chr7 (49941031-49940766) | |
| 263-512, gnl|dasNov1|scaffold_29072 (41571-41848) | |
| 263-512, gnl|echTel1|scaffold_287341 (87466-87743) | |
| 263-512, gnl|fr1|chrUn (310172027-310171747) | |
| 263-512, gnl|galGal2|chr11_random (70816-71090) | |
| 263-512, gnl|hg17|chr16 (67406901-67407175) | |
| 263-512, gnl|Hg17|chr16 (67406917-67407166) | |
| 263-512, gnl|loxAfr1|scaffold_7780 (6001-5724) | |
| 263-512, gnl|mm7|chr8 (105259421-105259696) | |
| 263-512, gnl|Mm7|chr8 (105259439-105259688) | |
| 263-512, gnl|monDom2|scaffold_23 (5417809-5417527) | |
| 263-512, gnl|oryCun1|scaffold_168224 (96-363) | |
| 263-512, gnl|panTro1|chr18 (61721542-61721816) | |
| 263-512, gnl|rheMac2|chr20 (67176908-67177182) | |
| 263-512, gnl|rn3|chr19 (36507374-36507650) | |
| 263-512, gnl|tetNig1|chrUn_random (31137640-31137365) | |
| 263-512, gnl|xenTro1|scaffold_132 (1581184-1580910) | |
| 879-1111, gnl|bosTau2|chr18 (14224471-14224239) | |
| 879-1111, gnl|Hg17|chr16 (67414801-67415030) | |
| 879-1111, gnl|Mm7|chr8 (105262839-105263068) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| nep (0.183925) | |
| nje (0.16592) | |
| pla (0.133672) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nep (0.183925) | |
| nje (0.16592) | |
| pla (0.133672) |