Ss1.1-Pig4-TMW8038P02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGTCACAAGGCCGCAGAAGTTAGTCTCACAAACAGCAGCGAGAGGAAAGAAAAGAGA AAGAACTGCCTGGGTTGTTCACTTCACGCCCAGCACCTTGACCCGGAACTATTCTACACT TCTCCTCCCCCATTCTCGGTTGAGAAGGGAAGAGAAGAACCGCCAGTTCTGGCCCGGCAT GCCTTGGGCTTCCGGTGACCTCTGGCCCTTTTCTGTCGTCCGCTCTTGCTGCCTAGCGTG CTCGCTCGCTCACTGCTTTCCTTCCGTGACTCGCTCCGGTTTACGTTCGCACGCTGCCTG GTGACTGTGGCGCCAGCGACAAGCAGGGAGGCGGTGGCGGAGGACACCCGTCATGGCCGC CTCTAAACCTGTGGAGGCGGCGGTGGTCGCAGCGGCTGTGCCCAGCTCCGGGAGTGGAGT GGGCGGTGGCAGTGCGACTACAGGCCCGGGCACCGGGGGCCTGCCGCGATGGCAGCTCGC CCTGGCAGTCGGAGCGCCCCTGCTGCTGGGCGCGGGTGCCATGTACCTGTGGAGCCGGCA GCGGCGGCGCCGGGAGACCGGGGGCCGAGGCGACGCCGGCGGCCTGAAGCGCAACAGTGA ACGGAAGACCCCGGAGGGCAGGGCAAGTCCGGCTCCGGGCAGCGGACACCCCGAAGGCCC CGGTGCTCACCTGGAAATGAACTCTCTTGATAGAGCCCAAGCAGCCAAGAACAAAGGCAA CAAATATTTTAAAGCAGGAAAATATGAACAAGCTATTCAGTGCTATACTGAGGCTATCAG TTTGTGCCCTACAGAGAAGAACGTTGACCTTTCCACGTTTTATCAAAACAGAGCTGCTGC CTTTGAGCAGTTGCAAAAATGGAAAGAGGTGGCACAAGATTGTACAAAGGCTGTTGAACT TAATCCCAAATATGTGAAAGCTCTCTTTAGACGTGCAAAAGCCCACGAGAAGCTAGACAA TAAGAAGGAATGTTTAGAAGATGTCACAGCTGTGTGTATATTAGAAGGGTTCCAAAATCA ACAAAGCATGCTGTTAGCTGATAAAGTTCTTAAACTTCTTGGGAAAGAGAAAGCCAAAGA AAAATACAAGAATCGTGAACCTCTGATGCCATCTCCACAGTTTATCAAATCTTACTTCAG TTCTTTTACTGATGATATAATTTCTCAGCCAATGCTTAAAGGAGAGAAGTCTGATGAAGA TAAAGACAAGGAAGGGGAGGCTTTAGAAGTGAAAGAAAATTCTGGATATTTAAAGGCCAA ACAGTATATGGAAGAAGAAAACTATGATAAAATCATAAGTGAATGCTCAAAAGAAATAGA TGCTCAAGGCAAATATATGGCAGAAGCATTATTACTACGAGCTACCTTCTACCTGCTAAT TGGCAACGCCAACGCAGCCAAACCAGATTTAGATAAGGTCATCAGCTTGAAAGAAGCTAA TGTGAAGCTCCGAGCAAATGCTCTTATCAAAAGAGGCAGCATGTACATGCAACAGCAACA GCCTTTGCTGTCTACTCAGGATTTTAACATGGCTGCCGACATTGATCCTCAGAATGCTGA TGTTTATCACCACCGAGGACAGCTGAAAATATTGCTTGATCAAGTTGAAGAAGCAGTGGC AGATTTTGATGAATGTATTCGATTAAGACCCGAGTCTGCTCTGGCACAAGCTCAGAAATG TTTTGCATTGTATCGCCAGGCATATACAGGAAACAATTCTTCACAAATCCAAGCAGCTAT GAAAGGTTTTGAAGAGGTCATAAAAAAATTTCCAAAGTGTGCTGAAGGCTATGCATTATA TGCCCAGGCATTAACAGATCAACAGCAGTTTGGTAAAGCTGATGAAATGTATGATAAATG TATTGATTTGGAACCAGATAATGCCACAACATATGTTCATAAAGGTTTACTTCAACTTCA GTGGAAGCAAGATCTGGATAGAGGTTTGGAGCTTATCAGCAAGGCTATTGAAATTGACAA TAAGTGTGATTTTGCATATGAAACCATGGGAACTATTGAAGTACAAAGAGGAAACATGGA AAAAGCCATTGACATGTTCAACAAAGCTATTAACCTGGCCAAATCAGAAATGGAGATGGC TCATCTCTACTCACTCTGTGATGCTGCCCATGCCCAGACAGAAGTTGCAAAGAAATATGG ATTAAAACCACCAACATTGTAAAATATGGGGGAAGGAAAATGACCCTCTTTTTAGAAGTT TACCCCCTCTTCAACTGAACCCTAAAGACACTGTCATGAACTGTGTTGAATGGTGGAACT TAGTATATCTGTTTGTGCAGTTGTCATTTGTTACATCTGTTTCATGTTTAGGTGTTGTGG GAGTGGCTGTTGAAGAAAGTTTGCAGTGTTGCAGCTTTTATTCCCTGTGCAGCAAAAGCT TAGAACCTGTTAAAGGGATATTAAAATAAAGTTGCAAAGAGTACAAATGATAATTGGCCA TGCAAATAAAAACTTTGATTTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGTCACAAGGCCGCAGAAGTTAGTCTCACAAACAGCAGCGAGAGGAAAGAAAAGAGA AAGAACTGCCTGGGTTGTTCACTTCACGCCCAGCACCTTGACCCGGAACTATTCTACACT TCTCCTCCCCCATTCTCGGTTGAGAAGGGAAGAGAAGAACCGCCAGTTCTGGCCCGGCAT GCCTTGGGCTTCCGGTGACCTCTGGCCCTTTTCTGTCGTCCGCTCTTGCTGCCTAGCGTG CTCGCTCGCTCACTGCTTTCCTTCCGTGACTCGCTCCGGTTTACGTTCGCACGCTGCCTG GTGACTGTGGCGCCAGCGACAAGCAGGGAGGCGGTGGCGGAGGACACCCGTCATGGCCGC CTCTAAACCTGTGGAGGCGGCGGTGGTCGCAGCGGCTGTGCCCAGCTCCGGGAGTGGAGT GGGCGGTGGCAGTGCGACTACAGGCCCGGGCACCGGGGGCCTGCCGCGATGGCAGCTCGC CCTGGCAGTCGGAGCGCCCCTGCTGCTGGGCGCGGGTGCCATGTACCTGTGGAGCCGGCA GCGGCGGCGCCGGGAGACCGGGGGCCGAGGCGACGCCGGCGGCCTGAAGCGCAACAGTGA ACGGAAGACCCCGGAGGGCAGGGCAAGTCCGGCTCCGGGCAGCGGACACCCCGAAGGCCC CGGTGCTCACCTGGAAATGAACTCTCTTGATAGAGCCCAAGCAGCCAAGAACAAAGGCAA CAAATATTTTAAAGCAGGAAAATATGAACAAGCTATTCAGTGCTATACTGAGGCTATCAG TTTGTGCCCTACAGAGAAGAACGTTGACCTTTCCACGTTTTATCAAAACAGAGCTGCTGC CTTTGAGCAGTTGCAAAAATGGAAAGAGGTGGCACAAGATTGTACAAAGGCTGTTGAACT TAATCCCAAATATGTGAAAGCTCTCTTTAGACGTGCAAAAGCCCACGAGAAGCTAGACAA TAAGAAGGAATGTTTAGAAGATGTCACAGCTGTGTGTATATTAGAAGGGTTCCAAAATCA ACAAAGCATGCTGTTAGCTGATAAAGTTCTTAAACTTCTTGGGAAAGAGAAAGCCAAAGA AAAATACAAGAATCGTGAACCTCTGATGCCATCTCCACAGTTTATCAAATCTTACTTCAG TTCTTTTACTGATGATATAATTTCTCAGCCAATGCTTAAAGGAGAGAAGTCTGATGAAGA TAAAGACAAGGAAGGGGAGGCTTTAGAAGTGAAAGAAAATTCTGGATATTTAAAGGCCAA ACAGTATATGGAAGAAGAAAACTATGATAAAATCATAAGTGAATGCTCAAAAGAAATAGA TGCTCAAGGCAAATATATGGCAGAAGCATTATTACTACGAGCTACCTTCTACCTGCTAAT TGGCAACGCCAACGCAGCCAAACCAGATTTAGATAAGGTCATCAGCTTGAAAGAAGCTAA TGTGAAGCTCCGAGCAAATGCTCTTATCAAAAGAGGCAGCATGTACATGCAACAGCAACA GCCTTTGCTGTCTACTCAGGATTTTAACATGGCTGCCGACATTGATCCTCAGAATGCTGA TGTTTATCACCACCGAGGACAGCTGAAAATATTGCTTGATCAAGTTGAAGAAGCAGTGGC AGATTTTGATGAATGTATTCGATTAAGACCCGAGTCTGCTCTGGCACAAGCTCAGAAATG TTTTGCATTGTATCGCCAGGCATATACAGGAAACAATTCTTCACAAATCCAAGCAGCTAT GAAAGGTTTTGAAGAGGTCATAAAAAAATTTCCAAAGTGTGCTGAAGGCTATGCATTATA TGCCCAGGCATTAACAGATCAACAGCAGTTTGGTAAAGCTGATGAAATGTATGATAAATG TATTGATTTGGAACCAGATAATGCCACAACATATGTTCATAAAGGTTTACTTCAACTTCA GTGGAAGCAAGATCTGGATAGAGGTTTGGAGCTTATCAGCAAGGCTATTGAAATTGACAA TAAGTGTGATTTTGCATATGAAACCATGGGAACTATTGAAGTACAAAGAGGAAACATGGA AAAAGCCATTGACATGTTCAACAAAGCTATTAACCTGGCCAAATCAGAAATGGAGATGGC TCATCTCTACTCACTCTGTGATGCTGCCCATGCCCAGACAGAAGTTGCAAAGAAATATGG ATTAAAACCACCAACATTGTAAAATATGGGGGAAGGAAAATGACCCTCTTTTTAGAAGTT TACCCCCTCTTCAACTGAACCCTAAAGACACTGTCATGAACTGTGTTGAATGGTGGAACT TAGTATATCTGTTTGTGCAGTTGTCATTTGTTACATCTGTTTCATGTTTAGGTGTTGTGG GAGTGGCTGTTGAAGAAAGTTTGCAGTGTTGCAGCTTTTATTCCCTGTGCAGCAAAAGCT TAGAACCTGTTAAAGGGATATTAAAATAAAGTTGCAAAGAGTACAAATGATAATTGGCCA TGCAAATAAAAACTTTGATTTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 116-223, - strand, RNAz p=0.872801 | |
| 304-457, + strand, RNAz p=0.826339 | |
| 1330-1447, - strand, RNAz p=0.807065 | |
| 1678-1808, + strand, RNAz p=0.982094 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 116-223, - strand, RNAz p=0.872801 | |
| 304-457, + strand, RNAz p=0.826339 | |
| 1330-1447, - strand, RNAz p=0.807065 | |
| 1678-1808, + strand, RNAz p=0.982094 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014820, + |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-679, gnl|bosTau2|chr1 (24114484-24113791) | |
| 1-679, gnl|Hg17|chr3 (101602824-101602160) | |
| 1-679, gnl|Mm7|chr16 (56979017-56979664) | |
| 853-983, gnl|bosTau2|chr1 (24099735-24099605) | |
| 853-983, gnl|canFam2|chr33 (9965234-9965377) | |
| 853-983, gnl|danRer3|chr6 (12028069-12027929) | |
| 853-983, gnl|dasNov1|scaffold_97882 (3518-3661) | |
| 853-983, gnl|echTel1|scaffold_283052 (43016-43158) | |
| 853-983, gnl|fr1|chrUn (42238924-42239060) | |
| 853-983, gnl|galGal2|chr1 (78961264-78961407) | |
| 853-983, gnl|hg17|chr3 (101587748-101587891) | |
| 853-983, gnl|Hg17|chr3 (101587879-101587749) | |
| 853-983, gnl|loxAfr1|scaffold_10415 (53566-53709) | |
| 853-983, gnl|mm7|chr16 (56992255-56992112) | |
| 853-983, gnl|Mm7|chr16 (56992122-56992252) | |
| 853-983, gnl|monDom2|scaffold_50 (10340231-10340088) | |
| 853-983, gnl|oryCun1|scaffold_181317 (12698-12841) | |
| 853-983, gnl|panTro1|chr2 (102823031-102823174) | |
| 853-983, gnl|rheMac2|chr2 (20593419-20593562) | |
| 853-983, gnl|rn3|chr11 (44383895-44384038) | |
| 853-983, gnl|tetNig1|chr1_random (1290639-1290781) | |
| 853-983, gnl|xenTro1|scaffold_116 (1869671-1869811) | |
| 1082-1239, gnl|bosTau2|chr1 (24097038-24096881) | |
| 1082-1239, gnl|Hg17|chr3 (101583306-101583149) | |
| 1082-1239, gnl|Mm7|chr16 (56995491-56995648) | |
| 1240-1447, gnl|bosTau2|chr1 (24093933-24093726) | |
| 1240-1447, gnl|Hg17|chr3 (101579446-101579239) | |
| 1240-1447, gnl|Mm7|chr16 (56998049-56998256) | |
| 1678-1808, gnl|bosTau2|chr1 (24088980-24088850) | |
| 1678-1808, gnl|canFam2|chr33 (9951821-9951981) | |
| 1678-1808, gnl|danRer3|chr6 (12035292-12035163) | |
| 1678-1808, gnl|dasNov1|scaffold_27546 (6080-5923) | |
| 1678-1808, gnl|echTel1|scaffold_245824 (3351-3235) | |
| 1678-1808, gnl|fr1|chrUn (42236113-42236256) | |
| 1678-1808, gnl|galGal2|chr1 (78952482-78952639) | |
| 1678-1808, gnl|hg17|chr3 (101574120-101574275) | |
| 1678-1808, gnl|Hg17|chr3 (101574267-101574139) | |
| 1678-1808, gnl|mm7|chr16 (57003883-57003720) | |
| 1678-1808, gnl|Mm7|chr16 (57003732-57003862) | |
| 1678-1808, gnl|monDom2|scaffold_50 (10349925-10349757) | |
| 1678-1808, gnl|oryCun1|scaffold_149291 (4707-4855) | |
| 1678-1808, gnl|panTro1|chr2 (102809334-102809489) | |
| 1678-1808, gnl|rheMac2|chr2 (20580133-20580290) | |
| 1678-1808, gnl|rn3|chr11 (44366899-44367049) | |
| 1678-1808, gnl|tetNig1|chr1_random (1288749-1288893) | |
| 1678-1808, gnl|xenTro1|scaffold_116 (1861497-1861642) | |
| 2027-2484, gnl|bosTau2|chr1 (24077521-24077066) | |
| 2027-2484, gnl|Hg17|chr3 (101567253-101566798) | |
| 2027-2484, gnl|Mm7|chr16 (57010240-57010691) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-679, gnl|bosTau2|chr1 (24114484-24113791) | |
| 1-679, gnl|Hg17|chr3 (101602824-101602160) | |
| 1-679, gnl|Mm7|chr16 (56979017-56979664) | |
| 853-983, gnl|bosTau2|chr1 (24099735-24099605) | |
| 853-983, gnl|canFam2|chr33 (9965234-9965377) | |
| 853-983, gnl|danRer3|chr6 (12028069-12027929) | |
| 853-983, gnl|dasNov1|scaffold_97882 (3518-3661) | |
| 853-983, gnl|echTel1|scaffold_283052 (43016-43158) | |
| 853-983, gnl|fr1|chrUn (42238924-42239060) | |
| 853-983, gnl|galGal2|chr1 (78961264-78961407) | |
| 853-983, gnl|hg17|chr3 (101587748-101587891) | |
| 853-983, gnl|Hg17|chr3 (101587879-101587749) | |
| 853-983, gnl|loxAfr1|scaffold_10415 (53566-53709) | |
| 853-983, gnl|mm7|chr16 (56992255-56992112) | |
| 853-983, gnl|Mm7|chr16 (56992122-56992252) | |
| 853-983, gnl|monDom2|scaffold_50 (10340231-10340088) | |
| 853-983, gnl|oryCun1|scaffold_181317 (12698-12841) | |
| 853-983, gnl|panTro1|chr2 (102823031-102823174) | |
| 853-983, gnl|rheMac2|chr2 (20593419-20593562) | |
| 853-983, gnl|rn3|chr11 (44383895-44384038) | |
| 853-983, gnl|tetNig1|chr1_random (1290639-1290781) | |
| 853-983, gnl|xenTro1|scaffold_116 (1869671-1869811) | |
| 1082-1239, gnl|bosTau2|chr1 (24097038-24096881) | |
| 1082-1239, gnl|Hg17|chr3 (101583306-101583149) | |
| 1082-1239, gnl|Mm7|chr16 (56995491-56995648) | |
| 1240-1447, gnl|bosTau2|chr1 (24093933-24093726) | |
| 1240-1447, gnl|Hg17|chr3 (101579446-101579239) | |
| 1240-1447, gnl|Mm7|chr16 (56998049-56998256) | |
| 1678-1808, gnl|bosTau2|chr1 (24088980-24088850) | |
| 1678-1808, gnl|canFam2|chr33 (9951821-9951981) | |
| 1678-1808, gnl|danRer3|chr6 (12035292-12035163) | |
| 1678-1808, gnl|dasNov1|scaffold_27546 (6080-5923) | |
| 1678-1808, gnl|echTel1|scaffold_245824 (3351-3235) | |
| 1678-1808, gnl|fr1|chrUn (42236113-42236256) | |
| 1678-1808, gnl|galGal2|chr1 (78952482-78952639) | |
| 1678-1808, gnl|hg17|chr3 (101574120-101574275) | |
| 1678-1808, gnl|Hg17|chr3 (101574267-101574139) | |
| 1678-1808, gnl|mm7|chr16 (57003883-57003720) | |
| 1678-1808, gnl|Mm7|chr16 (57003732-57003862) | |
| 1678-1808, gnl|monDom2|scaffold_50 (10349925-10349757) | |
| 1678-1808, gnl|oryCun1|scaffold_149291 (4707-4855) | |
| 1678-1808, gnl|panTro1|chr2 (102809334-102809489) | |
| 1678-1808, gnl|rheMac2|chr2 (20580133-20580290) | |
| 1678-1808, gnl|rn3|chr11 (44366899-44367049) | |
| 1678-1808, gnl|tetNig1|chr1_random (1288749-1288893) | |
| 1678-1808, gnl|xenTro1|scaffold_116 (1861497-1861642) | |
| 2027-2484, gnl|bosTau2|chr1 (24077521-24077066) | |
| 2027-2484, gnl|Hg17|chr3 (101567253-101566798) | |
| 2027-2484, gnl|Mm7|chr16 (57010240-57010691) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| vin (0.997672) | |
| nms (0.641574) | |
| sug (0.509165) | |
| isp (0.300752) | |
| lin (0.291206) | |
| tra (0.246184) | |
| tes (0.207814) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.997672) | |
| nms (0.641574) | |
| sug (0.509165) | |
| isp (0.300752) | |
| lin (0.291206) | |
| tra (0.246184) | |
| tes (0.207814) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |